Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1 269 3e-67 >seq1 Length=3593316 Score = 269 bits (298), Expect = 3e-67 Identities = 596/882 (68%), Gaps = 14/882 (2%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 ||||| || |||| || || ||| |||||||| || || || | ||| || ||||| Sbjct 930126 ACACCACTTTTTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCTTCTAAT 930067 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAA-AATATCTTAGAGTACCCCAG 16020 ||||| | ||||||||||||||| ||||| || | | | ||| | || | | | | Sbjct 930066 GATATTTGTTCCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACAATCTAA- 930008 Query 16021 TTCCGTAACTAATCTATCTGCTACAA-ATTCTATATATTGACACATTAAGTCGCAATTAA 16079 ||| | ||| | ||| || |||| |||| ||||| | ||||||| | ||| | Sbjct 930007 TTCAACCAATAAACGATCGGC-ACAATATTCAATATAATCGGACATTAATTTAGCATTCA 929949 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 | || || | | ||| || | || | || | ||||| |||||| || ||| || | Sbjct 929948 TACCGATCAATGATACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACAGCAT 929889 Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGG---TGTTTAAACA 16196 | |||| || || |||| | || | || | | || | || | ||||| Sbjct 929888 CAATAATAATTTCAACAATTCGTTGT---GATGATGGACGATTACGAATATGATGAAACA 929832 Query 16197 TTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAG 16256 ||||| || || || ||||||| |||||| || | || | ||| || ||||| | Sbjct 929831 AAAGACAGGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAAAAGG 929772 Query 16257 TTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAA 16316 | | || |||||| || ||||| |||| ||| || || || |||||||| || |||| Sbjct 929771 TAAGACCAGGCATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCGGAAA 929712 Query 16317 AGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTAT 16376 | ||||| || ||||||| ||||| || ||||| ||||| || | ||| | | || Sbjct 929711 AAAATATTCCTTCAACAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGAATCAT 929652 Query 16377 TACGAATCCATTTCTGTA-CCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATG 16435 | |||| | || |||||| ||||||| | || |||| | | ||| Sbjct 929651 CTTGTGTCCAACG-TATAGCCCATTTAGCTTTTTTCTCTACACAAGGTAGATTACGTATA 929593 Query 16436 GCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || || || | |||| ||| | | ||| || ||| |||| ||||| ||| Sbjct 929592 GCATTGAATAGAAAATCTTGTTCATTACGATCCGATACATAGGTATTAATCAATAATGAA 929533 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 ||||||||||| || | || || || || || ||||||||||| || || || || || Sbjct 929532 TACATTTCTGAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTGCTTCT 929473 Query 16556 GCTATTTGTACTTCCACGTA-AAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 | ||||||||| || ||| | ||| ||||| || | || ||||| || ||||| ||||| Sbjct 929472 GGTATTTGTACATC-ACGAATAAAACGTTCAGCTAAATTTTCATTAACAATACCATCACT 929414 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG 16674 |||||||||||| ||||||| || |||||||| |||||| | || | | ||| Sbjct 929413 TGCAGCAAAAAAAGCCAATACATGTGAAATGAAATGTTTTTCATTCGAATTTAATTTATT 929354 Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734 ||||| | | ||| | | || ||| |||||||| |||||||| || | || Sbjct 929353 CCAATGTACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATGCTTCAGC 929294 Query 16735 CTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 ||||| |||||| |||||||||||| ||||| || ||||| Sbjct 929293 TTTTTTGTACATTGTCCAAATATCATGATATTGAATTGGAAA 929252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511405948877040