Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq458 159 3e-34 >seq458 Length=503182 Score = 159 bits (176), Expect = 3e-34 Identities = 228/322 (71%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 101919 CTGAANNATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTAT 101978 |||| ||||||||| || | ||| | | ||| | || |||||||| || || | Sbjct 280679 CTGATGGATTCCAAGCCGTTATAATCATACGACGATCATTTGGATTTGTTTTGATTGTTT 280738 Query 101979 CAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTAT 102038 || | |||||||||||| |||| |||| || |||||||| | | | || Sbjct 280739 TTATAAGCTGTTTTAATTGATCAATACCTTGACCATTATAATCAGTTTGATTATCACGAT 280798 Query 102039 ATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTC 102098 |||| || || ||||| ||||| ||||| ||||| ||||| || ||||| ||||| | | Sbjct 280799 ATTCGGCACCAAAATGTCTCCATTGAAAACCATAAACAGGACCTAGATCACCTTCTTGAC 280858 Query 102099 TGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCA 102158 ||| ||||||||| |||| | |||| | | || ||||| ||||||||||| | | Sbjct 280859 GATCAATAAAACCAAGACTATCAAGAAATTCTTTTGAACCATTTGCATCCCAAATTTTTA 280918 Query 102159 CGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTT 102218 | || | | |||| | ||| ||||| || ||| | |||||||| || | ||||| Sbjct 280919 CACCTTTTTCGGATAATTTTTTCGAATCAGTTGAACCTTTTATAAACCATAATAATTCTT 280978 Query 102219 CAACAACACCTCTCCAAAATAC 102240 |||||||||| | ||||||||| Sbjct 280979 CAACAACACCACGCCAAAATAC 281000 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 101819 ATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGA 101878 |||||||| |||| |||||| |||||||||||||| | ||| ||||||||||||||| Sbjct 280522 ATATCAGCGGATCGTTGATAAAGTTGACAGGAAAGTTCATCATTACAGACATAAAATTGT 280581 Query 101879 CTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAA 101923 || |||||| || || || |||||||||||| ||| || Sbjct 280582 GCCAAACAATGACATGGTGGTAAAGCCATTTTAGGAAGATCTAAA 280626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361245379565822