Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq768 104 2e-17
seq558 98.7 8e-16
seq1 86.0 5e-12
>seq768
Length=1243675
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||||| ||||||| || | || ||||||||||| ||||| ||||||||
Sbjct 1130696 CCGCCACGCAGCCGCAGCACCAAGTGGATCGTCGACTCCTTTTGGATGTTGTAGTCCGCG 1130755
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | |||| |||| ||| || || ||| |||| || | |||||||||| ||
Sbjct 1130756 AGCGTGCGCCCGTCATCCAACTGCTTCCCGGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1130815
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| ||| || ||| || || || |||
Sbjct 1130816 ATGCCCTCCTTGTCCTGGATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACC 1130875
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| ||| |||| || || | ||| || || || ||||||||
Sbjct 1130876 TCAAGGGTGATGTTCTTCCCCGTGAGCGTCTTCACGAAGATTTGCAT 1130922
>seq558
Length=611125
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | || |||| || | ||||||||| || |||||||| ||||||||
Sbjct 303940 CCGCCGCGCAGTCGCAGTACCAAGTGAATAGTGGACTCTTTCTGAATGTTGTAGTCCGCG 303881
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | |||| || ||||| || |||||| | || | | |||||||||| ||
Sbjct 303880 AGCGTGCGTCCGTCGTCGAGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCGGA 303821
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| || ||||| |||||| ||| || ||| || || || ||| |
Sbjct 303820 ATGCCCTCTTTGTCCTGGATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACT 303761
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || ||| ||||||| || | || ||||||||||| |||||
Sbjct 303760 TCGAGCGTTATGTTCTTGCCCGTGAGTGTCTTGACAAATATCTGCAT 303714
>seq1
Length=3593316
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|| || || ||||||||||| || |||| || ||| || | || || |||||||||||
Sbjct 1032542 GTCGATTCTTTTTGAATGTTGTAATCCGACAATGTTCGGCCATCTTCAAGCTGTTTGCCA 1032601
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
|| |||| | | |||||||| || | ||||| ||||| ||| || ||
Sbjct 1032602 GCGAAAATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATTTTAGCCTTG 1032661
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | | | ||||| ||| ||| ||||| |||||||| || || || || |||
Sbjct 1032662 ACATTTTCAATGGTATCCGAGGGTTCCACTTCCAATGTAATGGTTTTACCAGTCAAAGTT 1032721
Query 21159 TTGACAAATATTTGCAT 21175
|||||||| || |||||
Sbjct 1032722 TTGACAAAAATCTGCAT 1032738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422252396612552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |