Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq335 226 3e-54 seq768 138 1e-27 seq558 120 3e-22 seq1 95.1 1e-14 seq391 93.3 4e-14 >seq335 Length=939964 Score = 226 bits (250), Expect = 3e-54 Identities = 491/717 (68%), Gaps = 26/717 (4%) Strand=Plus/Plus Query 116660 GAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGA- 116718 || || || || ||||||| |||||| | |||||||| ||| | ||||||||| Sbjct 899777 GAAGCCTCCTTTTGGACCGCCGAGGAAATTGACCTGTCTGCCGACTTGGACGACTGGGAC 899836 Query 116719 GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAG 116778 ||||| ||| ||| ||||| || ||||||||||||||||| || |||||||| || || Sbjct 899837 GCGCT-GAAGGACGGTGAGCGGCACTTCATCAAGCACGTGCTCGCGTTTTTCGCGGCGAG 899895 Query 116779 CGACGGCATCGTCAACGAGAATCTGGTC--GAGCGTTTCGCTCAGGAGGTGCAGGTGGCC 116836 |||||||||||| ||||||||| | | || ||| | || || ||||| || || Sbjct 899896 CGACGGCATCGTGCTCGAGAATCTCGCCAGCCGCTTTTTGGTC--GAAATGCAGCTGCCC 899953 Query 116837 GAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTAT 116896 | | || || |||| || ||| | || ||||| ||| | |||||||| | ||| Sbjct 899954 GCTGTCCGCGAGTTTTACGCGTTCCAGGTTGCGATGGAAAACATCCACTCGGAGACGTAC 900013 Query 116897 TCGACCCTCATCGACACGTACGT-GCGC--TCTTCGGAGGAGAAGCTCCGTTTGTTGAAC 116953 || |||||||| ||| | |||| | || || ||||| || ||| || | Sbjct 900014 AGCTTGCTGATCGACACCTACCTCGCGCAGCAGGCCGACGAAAAGCTGCGGTTGCTGCGC 900073 Query 116954 GCCATCGAG-ACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGC 117012 || |||||| ||| ||||| |||||| ||||| ||||||||| | |||||| | Sbjct 900074 GCAATCGAGCACG-TGCCGGCGGTCAAACGCAAGGCGGAGTGGGCGGTCAAGTGGATCAC 900132 Query 117013 CGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072 ||| || ||| ||| || |||||| | || || || ||||| ||| |||| Sbjct 900133 AGGC-TCGAACTCGC--TCGCGGAACGCCTGCTCGCGTTTTGCGCGGTCGAAGGCATCTT 900189 Query 117073 CTT-TTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 || ||| |||| | ||| || || ||||||||||| |||||||| ||||||| | Sbjct 900190 GTTCAGCGGCTCGTTTTG-CGCGATCTTCTGGCTCAAGAAGCGCGGCCTGCTGCCCGGGC 900248 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 | | |||||||||||| || ||||| | ||||| || |||| || || | | | Sbjct 900249 TCAGTTTCAGCAACGAACTGATCTCGCGCGACGAAGGCATGCACACAGAGTTCGGCGCGT 900308 Query 117192 TGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGG-----GAGATCGT 117246 |||| | ||| || ||||| ||||| || || | |||| | |||||| Sbjct 900309 TGCTCTACAACTGTT---TGCAG-GACCGCTTGCCGCAAG-AACAGGCCTACGCGATCGT 900363 Query 117247 CACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCT 117306 | ||| ||| ||| | | |||| | |||| ||||||| |||||||||| | ||| | Sbjct 900364 CTGCGAGGCGCTCGACGTAGAGCGCCACTTCATCACCGAGGCGCTGCCGGCCGGGCTGAT 900423 Query 117307 GGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCT 117363 || | || || |||| ||| ||| | |||| ||| ||||| ||||||| Sbjct 900424 CGGCATGAACGCAGACTTGATGGTGCAGTACCTGGAGTGCGTTACCGACCGGCTGCT 900480 >seq768 Length=1243675 Score = 138 bits (152), Expect = 1e-27 Identities = 173/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||||||||| || | ||||||| | || || || | | | Sbjct 1130922 ATGCAAATCTTCGTGAAGACGCTCACGGGGAAGAACATCACCCTTGAGGTGGACCCAAAC 1130863 Query 40750 GACAGCGTGCAAACGC-TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| || | | || |||| | || || | ||||| |||||||| || ||||||| Sbjct 1130862 GACA-CGATCGAGAGCGTCAAAGCTAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 1130804 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | || || || ||| |||| |||| |||||| ||| |||||||| Sbjct 1130803 GCAGCGTCTGATTTTTGCCGGGAAGCAGTTGGATGACGGGCGCACGCTCGCGGACTACAA 1130744 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGCTTG 40923 |||||| |||||| | ||| | || | ||| |||| || | ||||||||| || Sbjct 1130743 CATCCAAAAGGAGTCGACGATCCACTTGGTGCTGCGGCTGCGTGGCGGCGGCGTG 1130689 >seq558 Length=611125 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || || ||||||||||| | ||| || |||| || || | | | Sbjct 303714 ATGCAGATATTTGTCAAGACACTCACGGGCAAGAACATAACGCTCGAAGTGGACCCAAAC 303773 Query 40750 GACAGCGTGCAAACGC-TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| || | | || |||| | || || | |||||||||||||| || ||||||| Sbjct 303774 GACA-CGATCGAGAGCGTCAAAGCTAAGATCCAGGACAAAGAGGGCATTCCGCCGGACCA 303832 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||||| || ||||| ||||||| ||||| ||| |||||||| Sbjct 303833 GCAGCGCTTGATCTTTGCGGGGAAGCAGCTCGACGACGGACGCACGCTCGCGGACTACAA 303892 Query 40869 CATCCAGAAGGAGGCCAC 40886 ||| ||||| ||| |||| Sbjct 303893 CATTCAGAAAGAGTCCAC 303910 >seq1 Length=3593316 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || ||||||||||| | ||||| ||| | | Sbjct 1032510 ATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATCACATTAGACGTTGAACCATCT 1032451 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | |||| |||||||| || |||||||| || || | |||||| Sbjct 1032450 GATACAATCGAAAATGTGAAGGCAAAAATTCAGGATAAAGAGGGAATTCCACCAGACCAG 1032391 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || || ||||| | || || | || || | || |||||| Sbjct 1032390 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACATTATCGGATTACAAC 1032331 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| || ||| | || ||||| | || ||||| Sbjct 1032330 ATCCAAAAAGAGTCAACTTTGCATTTGGTATTGCG 1032296 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||||||||| | || || ||||||||||| | || |||||| | | Sbjct 1033481 ATGCAAATCTTCGTAAAAACATTGACTGGTAAAACCATCACTTTGGAAGTCGAACCATCG 1033422 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | || | ||||||| || ||||| ||||| || | || ||| Sbjct 1033421 GACACCATCGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGCATTCCACCAGATCAG 1033362 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||| | |||| || || ||||| |||| || | || || | ||| || || Sbjct 1033361 CAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGTCCGATTATAAT 1033302 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || ||||| | || ||||| | || ||||| Sbjct 1033301 ATTCAAAAGGAATCAACATTGCATTTGGTATTGCG 1033267 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || || |||||||| || | || || ||| || | Sbjct 1032738 ATGCAGATTTTTGTCAAAACTTTGACTGGTAAAACCATTACATTGGAAGTGGAACCCTCG 1032679 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| |||||| ||||| | |||||||| || || || | |||||| Sbjct 1032678 GATACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGACCAG 1032619 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | ||| ||||||||||| || || | || || | || |||||| Sbjct 1032618 CAACGTTTGATTTTCGCTGGCAAACAGCTTGAAGATGGCCGAACATTGTCGGATTACAAC 1032559 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTT 40907 || || || || | || || ||||| || ||||| || Sbjct 1032558 ATTCAAAAAGAATCGACACTTCATCTCGTATTGCGATT 1032521 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||||||||| | || || |||||||||||| | || || ||| | | Sbjct 1031827 AATGCAAATTTTCGTAAAAACATTGACCGGTAAAACCATCACCTTGGAAGTGGAACCATC 1031768 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | ||| |||| | |||||| | |||||||| || || || | || || Sbjct 1031767 GGATACTATCGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA 1031708 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || ||||| |||| || | || || | ||| || || Sbjct 1031707 GCAGCGTTTGATCTTTGCCGGAAAACAATTGGAAGATGGTCGAACATTGTCCGATTATAA 1031648 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| || || | || | ||| | || ||||| Sbjct 1031647 CATCCAAAAAGAATCGACATTACATTTGGTATTGCG 1031612 >seq391 Length=841353 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/232 (70%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | || || || | ||| ||| | || || ||| | | Sbjct 731052 ATGCAGATTTTCGTGAAAACATTAACAGGGAAGAACATTACCCTGGAGGTGGAACCAAAT 730993 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| ||||| | |||||||| || || ||| |||| ||| Sbjct 730992 GACACTATTGAGTCCATCAAAACCAAAATCCAAGACAAAGAAGGAATTCCCCCGGATCAG 730933 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| |||| || | || || || || || |||||| | ||||| | |||||||||| Sbjct 730932 CAAAGACTTATTTTTGCTGGTAAGCAACTAGACGACAACCGCACTTTATCCGACTACAAC 730873 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG-CTT-GAGG-GGCGGCG 40918 |||||||| || |||| | ||| ||||| | || ||| |||| || |||| Sbjct 730872 ATCCAGAAAGAATCCACAATTCATTTAGTGCTTCGTCTTAGAGGAGGTGGCG 730821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515210686002720