Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq335 226 3e-54
seq768 138 1e-27
seq558 120 3e-22
seq1 95.1 1e-14
seq391 93.3 4e-14
>seq335
Length=939964
Score = 226 bits (250), Expect = 3e-54
Identities = 491/717 (68%), Gaps = 26/717 (4%)
Strand=Plus/Plus
Query 116660 GAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGA- 116718
|| || || || ||||||| |||||| | |||||||| ||| | |||||||||
Sbjct 899777 GAAGCCTCCTTTTGGACCGCCGAGGAAATTGACCTGTCTGCCGACTTGGACGACTGGGAC 899836
Query 116719 GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAG 116778
||||| ||| ||| ||||| || ||||||||||||||||| || |||||||| || ||
Sbjct 899837 GCGCT-GAAGGACGGTGAGCGGCACTTCATCAAGCACGTGCTCGCGTTTTTCGCGGCGAG 899895
Query 116779 CGACGGCATCGTCAACGAGAATCTGGTC--GAGCGTTTCGCTCAGGAGGTGCAGGTGGCC 116836
|||||||||||| ||||||||| | | || ||| | || || ||||| || ||
Sbjct 899896 CGACGGCATCGTGCTCGAGAATCTCGCCAGCCGCTTTTTGGTC--GAAATGCAGCTGCCC 899953
Query 116837 GAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTAT 116896
| | || || |||| || ||| | || ||||| ||| | |||||||| | |||
Sbjct 899954 GCTGTCCGCGAGTTTTACGCGTTCCAGGTTGCGATGGAAAACATCCACTCGGAGACGTAC 900013
Query 116897 TCGACCCTCATCGACACGTACGT-GCGC--TCTTCGGAGGAGAAGCTCCGTTTGTTGAAC 116953
|| |||||||| ||| | |||| | || || ||||| || ||| || |
Sbjct 900014 AGCTTGCTGATCGACACCTACCTCGCGCAGCAGGCCGACGAAAAGCTGCGGTTGCTGCGC 900073
Query 116954 GCCATCGAG-ACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGC 117012
|| |||||| ||| ||||| |||||| ||||| ||||||||| | |||||| |
Sbjct 900074 GCAATCGAGCACG-TGCCGGCGGTCAAACGCAAGGCGGAGTGGGCGGTCAAGTGGATCAC 900132
Query 117013 CGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072
||| || ||| ||| || |||||| | || || || ||||| ||| ||||
Sbjct 900133 AGGC-TCGAACTCGC--TCGCGGAACGCCTGCTCGCGTTTTGCGCGGTCGAAGGCATCTT 900189
Query 117073 CTT-TTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131
|| ||| |||| | ||| || || ||||||||||| |||||||| ||||||| |
Sbjct 900190 GTTCAGCGGCTCGTTTTG-CGCGATCTTCTGGCTCAAGAAGCGCGGCCTGCTGCCCGGGC 900248
Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191
| | |||||||||||| || ||||| | ||||| || |||| || || | | |
Sbjct 900249 TCAGTTTCAGCAACGAACTGATCTCGCGCGACGAAGGCATGCACACAGAGTTCGGCGCGT 900308
Query 117192 TGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGG-----GAGATCGT 117246
|||| | ||| || ||||| ||||| || || | |||| | ||||||
Sbjct 900309 TGCTCTACAACTGTT---TGCAG-GACCGCTTGCCGCAAG-AACAGGCCTACGCGATCGT 900363
Query 117247 CACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCT 117306
| ||| ||| ||| | | |||| | |||| ||||||| |||||||||| | ||| |
Sbjct 900364 CTGCGAGGCGCTCGACGTAGAGCGCCACTTCATCACCGAGGCGCTGCCGGCCGGGCTGAT 900423
Query 117307 GGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCT 117363
|| | || || |||| ||| ||| | |||| ||| ||||| |||||||
Sbjct 900424 CGGCATGAACGCAGACTTGATGGTGCAGTACCTGGAGTGCGTTACCGACCGGCTGCT 900480
>seq768
Length=1243675
Score = 138 bits (152), Expect = 1e-27
Identities = 173/235 (74%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || ||||||||||| || | ||||||| | || || || | | |
Sbjct 1130922 ATGCAAATCTTCGTGAAGACGCTCACGGGGAAGAACATCACCCTTGAGGTGGACCCAAAC 1130863
Query 40750 GACAGCGTGCAAACGC-TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| || | | || |||| | || || | ||||| |||||||| || |||||||
Sbjct 1130862 GACA-CGATCGAGAGCGTCAAAGCTAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 1130804
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || || | || || || ||| |||| |||| |||||| ||| ||||||||
Sbjct 1130803 GCAGCGTCTGATTTTTGCCGGGAAGCAGTTGGATGACGGGCGCACGCTCGCGGACTACAA 1130744
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGCTTG 40923
|||||| |||||| | ||| | || | ||| |||| || | ||||||||| ||
Sbjct 1130743 CATCCAAAAGGAGTCGACGATCCACTTGGTGCTGCGGCTGCGTGGCGGCGGCGTG 1130689
>seq558
Length=611125
Score = 120 bits (132), Expect = 3e-22
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| ||||| || || || ||||||||||| | ||| || |||| || || | | |
Sbjct 303714 ATGCAGATATTTGTCAAGACACTCACGGGCAAGAACATAACGCTCGAAGTGGACCCAAAC 303773
Query 40750 GACAGCGTGCAAACGC-TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| || | | || |||| | || || | |||||||||||||| || |||||||
Sbjct 303774 GACA-CGATCGAGAGCGTCAAAGCTAAGATCCAGGACAAAGAGGGCATTCCGCCGGACCA 303832
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||||| || ||||| ||||||| ||||| ||| ||||||||
Sbjct 303833 GCAGCGCTTGATCTTTGCGGGGAAGCAGCTCGACGACGGACGCACGCTCGCGGACTACAA 303892
Query 40869 CATCCAGAAGGAGGCCAC 40886
||| ||||| ||| ||||
Sbjct 303893 CATTCAGAAAGAGTCCAC 303910
>seq1
Length=3593316
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||| | || || ||||||||||| | ||||| ||| | |
Sbjct 1032510 ATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATCACATTAGACGTTGAACCATCT 1032451
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | ||| | |||| |||||||| || |||||||| || || | ||||||
Sbjct 1032450 GATACAATCGAAAATGTGAAGGCAAAAATTCAGGATAAAGAGGGAATTCCACCAGACCAG 1032391
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | |||| || || ||||| | || || | || || | || ||||||
Sbjct 1032390 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACATTATCGGATTACAAC 1032331
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||| || ||| | || ||||| | || |||||
Sbjct 1032330 ATCCAAAAAGAGTCAACTTTGCATTTGGTATTGCG 1032296
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||||||||| | || || ||||||||||| | || |||||| | |
Sbjct 1033481 ATGCAAATCTTCGTAAAAACATTGACTGGTAAAACCATCACTTTGGAAGTCGAACCATCG 1033422
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | ||| | || | ||||||| || ||||| ||||| || | || |||
Sbjct 1033421 GACACCATCGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGCATTCCACCAGATCAG 1033362
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|||||| | |||| || || ||||| |||| || | || || | ||| || ||
Sbjct 1033361 CAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGTCCGATTATAAT 1033302
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|| || ||||| | || ||||| | || |||||
Sbjct 1033301 ATTCAAAAGGAATCAACATTGCATTTGGTATTGCG 1033267
Score = 91.5 bits (100), Expect = 2e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || ||||| | || || |||||||| || | || || ||| || |
Sbjct 1032738 ATGCAGATTTTTGTCAAAACTTTGACTGGTAAAACCATTACATTGGAAGTGGAACCCTCG 1032679
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | ||| |||||| ||||| | |||||||| || || || | ||||||
Sbjct 1032678 GATACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGACCAG 1032619
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | || | ||| ||||||||||| || || | || || | || ||||||
Sbjct 1032618 CAACGTTTGATTTTCGCTGGCAAACAGCTTGAAGATGGCCGAACATTGTCGGATTACAAC 1032559
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTT 40907
|| || || || | || || ||||| || ||||| ||
Sbjct 1032558 ATTCAAAAAGAATCGACACTTCATCTCGTATTGCGATT 1032521
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
||||||||| ||||||||||| | || || |||||||||||| | || || ||| | |
Sbjct 1031827 AATGCAAATTTTCGTAAAAACATTGACCGGTAAAACCATCACCTTGGAAGTGGAACCATC 1031768
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | ||| |||| | |||||| | |||||||| || || || | || ||
Sbjct 1031767 GGATACTATCGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA 1031708
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| || || ||||| |||| || | || || | ||| || ||
Sbjct 1031707 GCAGCGTTTGATCTTTGCCGGAAAACAATTGGAAGATGGTCGAACATTGTCCGATTATAA 1031648
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||| || || | || | ||| | || |||||
Sbjct 1031647 CATCCAAAAAGAATCGACATTACATTTGGTATTGCG 1031612
>seq391
Length=841353
Score = 93.3 bits (102), Expect = 4e-14
Identities = 162/232 (70%), Gaps = 3/232 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| | || || || | ||| ||| | || || ||| | |
Sbjct 731052 ATGCAGATTTTCGTGAAAACATTAACAGGGAAGAACATTACCCTGGAGGTGGAACCAAAT 730993
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | |||| ||||| | |||||||| || || ||| |||| |||
Sbjct 730992 GACACTATTGAGTCCATCAAAACCAAAATCCAAGACAAAGAAGGAATTCCCCCGGATCAG 730933
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||| |||| || | || || || || || |||||| | ||||| | ||||||||||
Sbjct 730932 CAAAGACTTATTTTTGCTGGTAAGCAACTAGACGACAACCGCACTTTATCCGACTACAAC 730873
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG-CTT-GAGG-GGCGGCG 40918
|||||||| || |||| | ||| ||||| | || ||| |||| || ||||
Sbjct 730872 ATCCAGAAAGAATCCACAATTCATTTAGTGCTTCGTCTTAGAGGAGGTGGCG 730821
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515210686002720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |