Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq458 197 2e-45 seq1 163 4e-35 seq391 156 6e-33 >seq458 Length=503182 Score = 197 bits (218), Expect = 2e-45 Identities = 252/345 (73%), Gaps = 4/345 (1%) Strand=Plus/Plus Query 205618 GGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatA 205677 |||||||| || |||| || ||| | | | || || |||| ||| | |||||| Sbjct 280684 GGATTCCAAGCCGTTATAATCATACGACGATCATTTGGATTTGTTTTGATTGTTTTTATA 280743 Query 205678 ATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTA 205737 | ||| |||||||||||| |||||| |||||| || | ||||| ||||| Sbjct 280744 AGCTGTTTTAATTGATCAATACCTTGACCATTATAATCAGTTTGATTATCACGATATTCG 280803 Query 205738 GCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCA 205797 ||||||||||| | |||||||||||||||||| ||||||| ||||||||||| | |||| Sbjct 280804 GCACCAAAATGTCTCCATTGAAAACCATAAACAGGACCTAGATCACCTTCTTGACGATCA 280863 Query 205798 TTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattcct 205857 |||||||| | | | | | ||| | ||| |||||| |||||||||| | | ||| Sbjct 280864 ATAAAACCAAGACTATCAAGAAATTCTTTTGAACCATTTGCATCCCAAATTTTTACACCT 280923 Query 205858 ttattttttaGAATATTT--GTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAA 205915 | ||| | ||| ||| | || |||||| || ||||||||||||||||||||||| Sbjct 280924 T--TTTCGGATAATTTTTTCGAATCAGTTGAACCTTTTATAAACCATAATAATTCTTCAA 280981 Query 205916 CAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATG 205960 ||| || | |||||| | ||||||||| | ||||| |||| Sbjct 280982 CAACACCACGCCAAAATACACGTTTTGTTGTGATCAATGGTAATG 281026 >seq1 Length=3593316 Score = 163 bits (180), Expect = 4e-35 Identities = 179/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| | || || ||||| || || |||| ||||| || | Sbjct 1032510 ATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATCACATTAGACGTTGAACCATCT 1032451 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| ||| | || |||||||| |||||||| || || ||||| || || Sbjct 1032450 GATACAATCGAAAATGTGAAGGCAAAAATTCAGGATAAAGAGGGAATTCCACCAGACCAG 1032391 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || ||||||||||| ||| |||| |||||| ||||| || Sbjct 1032390 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACATTATCGGATTACAAC 1032331 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || |||||||| ||||||||||||||||| || ||| |||| |||||||| ||| || Sbjct 1032330 ATCCAAAAAGAGTCAACTTTGCATTTGGTATTGCGTCTACGTGGTGGTATGCAAATTT 1032273 Score = 163 bits (180), Expect = 4e-35 Identities = 185/247 (75%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || |||| ||| | || || ||||| || ||| | || | ||| || Sbjct 1033481 ATGCAAATCTTCGTAAAAACATTGACTGGTAAAACCATCACTTTGGAAGTCGAACCATCG 1033422 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| |||||||||||||||||||| || ||||| ||||| Sbjct 1033421 GACACCATCGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGCATTCCACCAGATCAG 1033362 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || |||||||| || ||| |||| || || ||||||||| Sbjct 1033361 CAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGTCCGATTATAAT 1033302 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 |||||||| |||||||| ||||||||||| || ||| |||| || ||||| ||| ||| Sbjct 1033301 ATTCAAAAGGAATCAACATTGCATTTGGTATTGCGTCTACGTGGCGGTATGCAAATTTTC 1033242 Query 124778 ATAAAAA 124784 |||||| Sbjct 1033241 GTAAAAA 1033235 Score = 154 bits (170), Expect = 2e-32 Identities = 183/247 (74%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| ||||| || ||||| || ||| | || | || || Sbjct 1032054 ATGCAAATTTTCGTCAAGACCCTAACTGGTAAAACGATCACTTTGGAAGTCGAGCCATCG 1031995 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| ||| ||||| || ||||||||||| |||||||| ||||| ||||| Sbjct 1031994 GATACAATCGAAAATGTAAAAGCCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAG 1031935 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || |||||||| || ||| | || || ||| ||||| ||| Sbjct 1031934 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGCCGTACCTTATCCGATTACAAT 1031875 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 |||||||||||||| || || |||||||| | ||| | || ||||| || ||| ||| Sbjct 1031874 ATTCAAAAAGAATCCACCTTACATTTGGTGCTTCGTCTCCGTGGTGGAATGCAAATTTTC 1031815 Query 124778 ATAAAAA 124784 |||||| Sbjct 1031814 GTAAAAA 1031808 Score = 150 bits (166), Expect = 3e-31 Identities = 176/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || |||| || | || |||||||| || ||| | || | ||| || Sbjct 1033253 ATGCAAATTTTCGTAAAAACTTTGACTGGCAAAACCATTACTTTGGAAGTCGAACCATCG 1033194 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| ||||| || |||||||||||||| ||||| ||||| Sbjct 1033193 GACACTATCGAAAATGTGAAAGCTAAAATCCAGGATAAAGAAGGTATTCCACCAGATCAG 1033134 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || |||||| | || ||| | |||||||| ||||||||| Sbjct 1033133 CAACGATTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGAACATTGTCGGATTATAAT 1033074 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| || || |||||||| || |||||||| ||||| || ||| || Sbjct 1033073 ATACAAAAAGAATCCACCTTACATTTGGTATTGCGTTTACGTGGTGGAATGCAAATTT 1033016 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || |||| ||| | || || ||||| || || | || | ||| || Sbjct 1031827 AATGCAAATTTTCGTAAAAACATTGACCGGTAAAACCATCACCTTGGAAGTGGAACCATC 1031768 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | ||| ||||| ||||| ||||||||||| ||||| ||||| Sbjct 1031767 GGATACTATCGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA 1031708 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | || ||||| ||||||||||| || ||| |||||||||| |||||||| Sbjct 1031707 GCAGCGTTTGATCTTTGCCGGAAAACAATTGGAAGATGGTCGAACATTGTCCGATTATAA 1031648 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || ||||||||||| || || |||||||| || || | || ||||| Sbjct 1031647 CATCCAAAAAGAATCGACATTACATTTGGTATTGCGACTTCGTGGTGG 1031600 Score = 132 bits (146), Expect = 7e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || || || || |||||||| || | || | || || | Sbjct 1032282 ATGCAAATTTTCGTCAAAACTCTTACCGGTAAAACTATTACATTGGAAGTCGAGCCATCT 1032223 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| ||||| ||||| || || ||||| || || || || ||||| Sbjct 1032222 GATACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAG 1032163 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| ||||| ||||| || ||| | |||| || ||||| || Sbjct 1032162 CAACGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGAAGAACTTTGTCCGATTACAAC 1032103 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||| ||||| || |||||||||||||||||| | || |||||||| ||| || Sbjct 1032102 ATTCAAAAGGAATCGACATTGCATTTGGTTTTACGTCTCCGTGGTGGTATGCAAATTT 1032045 Score = 105 bits (116), Expect = 1e-17 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | || || ||||| || || | || | ||| | Sbjct 1032738 ATGCAGATTTTTGTCAAAACTTTGACTGGTAAAACCATTACATTGGAAGTGGAACCCTCG 1032679 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || ||||| ||||| |||||||| || ||||| || || Sbjct 1032678 GATACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGACCAG 1032619 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || ||||| | || ||| | |||||||| ||||| || Sbjct 1032618 CAACGTTTGATTTTCGCTGGCAAACAGCTTGAAGATGGCCGAACATTGTCGGATTACAAC 1032559 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||||||||| || | ||| | || || || ||||| |||||||| ||| || Sbjct 1032558 ATTCAAAAAGAATCGACACTTCATCTCGTATTGCGATTACGTGGTGGTATGCAAATTT 1032501 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 ||| || ||||| ||||| ||| | | ||||||||||| ||||| || || ||| |||| Sbjct 1032865 AGGCATCCCACCAGATCAGCAACGTTTGATTTTTGCAGGTAAACAGTTGGAAGATGGTCG 1032806 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 || || ||||| || |||||||||||||| || | ||| | || ||||| ||||| Sbjct 1032805 CACCCTATCGGATTACAACATTCAAAAAGAATCTACACTTCATCTCGTATTACGATTACG 1032746 Query 124760 AGGTGGTAT 124768 |||||||| Sbjct 1032745 TGGTGGTAT 1032737 >seq391 Length=841353 Score = 156 bits (172), Expect = 6e-33 Identities = 178/238 (75%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| |||| ||| ||||||| |||| ||| | | ||| | ||| | | | Sbjct 251616 ATGCAGATATTTGTAAAAACATTAACAGGTAAAAATATTTCGCTTGAGGTAGAACCCACT 251557 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| ||||||||| ||||| ||||| || || ||||||||| Sbjct 251556 GACACAATTGAAAATGTGAAAACGAAAATTCAGGATAAGGAAGGAATTCCGCCTGATCAA 251497 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| |||||||||||||| ||| | |||| || ||| || ||| Sbjct 251496 CAACGATTAATTTTTGCTGGAAAACAATTAGAAGATTCTAGAACTTTGTCAGACTACAAT 251437 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || |||||||| || || || || || |||| | |||| |||| || ||||| Sbjct 251436 ATCCAGAAAGAATCGACGTTACACTTAGTGCTACGGCTTAGAGGAGGTA-TACAAATT 251380 Score = 152 bits (168), Expect = 8e-32 Identities = 184/248 (74%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| || | ||||| |||| ||| || | || | || |||| Sbjct 251160 ATGCAAATTTTTGTAAAAACTTTGACAGGAAAAAATATTTCTCTCGAAGTAGAGCCAAAC 251101 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| | | ||| ||||||||| ||||||||||| || || ||||||||| Sbjct 251100 GATACCATTGAAAGCGTGAAAACGAAAATTCAGGATAAAGAAGGGATTCCGCCTGATCAA 251041 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | |||||||| ||||| ||| | || ||| || ||||| |||||| || Sbjct 251040 CAGCGGTTAATTTTTGCTGGAAAGCAACTTGACGATTCGCGGACATTGTCAGATTACAAC 250981 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAAAATTC 124777 |||||||| ||||||||||||||| |||| || || || |||| || | |||| |||| Sbjct 250980 ATTCAAAAGGAATCAACTTTGCATCTGGTGTTGCGGTTGAGAGGAGGATTTTAATTATTC 250921 Query 124778 --ATAAAA 124783 |||||| Sbjct 250920 CAATAAAA 250913 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || ||| ||||||| || | || || | ||| | ||| ||||| Sbjct 731052 ATGCAGATTTTCGTGAAAACATTAACAGGGAAGAACATTACCCTGGAGGTGGAACCAAAT 730993 Query 124599 GATACAATT---TCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || ||| || | | ||||| ||||| ||||| |||||||| || || || ||| Sbjct 730992 GACACTATTGAGTCCA--TCAAAACC-AAAATCCAAGACAAAGAAGGAATTCCCCCGGAT 730936 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||||| ||||||||||| || || ||| |||| || | || || ||| || || Sbjct 730935 CAGCAAAGACTTATTTTTGCTGGTAAGCAACTAGACGACAACCGCACTTTATCCGACTAC 730876 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || || |||||||| || | ||||| || | ||| | |||| ||| Sbjct 730875 AACATCCAGAAAGAATCCACAATTCATTTAGTGCTTCGTCTTAGAGGAGGT 730825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755443516089600