Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 125 6e-24 seq391 98.7 9e-16 seq558 91.5 1e-13 seq768 86.0 5e-12 >seq1 Length=3593316 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || | || ||| ||||| || | ||| || |||||||| ||||| |||||| | Sbjct 1031600 CCACCACGAAGTCGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCGGAC 1031659 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||| || | |||||||| || |||| | |||||||||||| || || Sbjct 1031660 AATGTTCGACCATCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTGGA 1031719 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || || || |||||| |||||| ||| || | ||||| || |||| || | || || Sbjct 1031720 ATACCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCGATAGTATCCGATGGT-TCCAC 1031778 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| ||||||| |||||||| ||||| ||||| Sbjct 1031779 TTCCAAGGTGATGGTTTTACCGGTCAATGTTTTTACGAAAATTTGCAT 1031826 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||||| ||| || | || | ||| || |||||||||||||||||||| Sbjct 1032510 TACCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCG 1032569 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || |||||||| |||||| | || | ||| ||||| || || | Sbjct 1032570 ACAATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTG 1032629 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||||| || || | ||| | ||| |||| | || | Sbjct 1032630 GAATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCA 1032689 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||||| || |||| |||||| |||||||||||||| Sbjct 1032690 CTTCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || ||||| || | ||| || || |||||||||||||||||| || ||| | ||| Sbjct 1032071 AAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGGACAAAGTTCTTCCATCT 1032130 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | || ||||| || |||| | || |||||||| || || || ||||| ||||| Sbjct 1032131 TCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCCTCTTTGTCC 1032190 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||||| ||| || | ||||| || || | |||||| || | || | ||| Sbjct 1032191 TGGATTTTGGCTTTTACATTTTCGATCGTATCAGATGGCTCGACTTCCAATGTAATAGTT 1032250 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| |||||||| || ||||| ||||| Sbjct 1032251 TTACCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | || || ||||||||||| ||||||||| | || || ||| || Sbjct 1031845 CACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAATCGGATAAGGTACGGCCATCTTC 1031904 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||||| |||||| | || | ||| |||||||| || || || || ||||| ||| Sbjct 1031905 CAATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTATCTTG 1031964 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || ||| || | ||||| || |||| |||||| || | || | |||||| Sbjct 1031965 AATCTTGGCTTTTACATTTTCGATTGTATCCGATGGCTCGACTTCCAAAGTGATCGTTTT 1032024 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||| ||||| Sbjct 1032025 ACCAGTTAGGGTCTTGACGAAAATTTGCAT 1032054 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAAT-CG 118568 |||| || |||| | ||| ||||| || | || ||||||||||| |||||||||| || Sbjct 1032282 TACCACCACGTAGACGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCG 1032341 Query 118569 CTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 | || || || ||| || | ||||| || || |||| | ||| ||||| || || Sbjct 1032342 ATAAT-GTACGACCATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGT 1032400 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTC 118687 || || ||||| || || ||||||| || || | ||||| || || | || | || Sbjct 1032401 GGAATTCCCTCTTTATCCTGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGT-TC 1032459 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || |||| ||||| || ||||| ||||| Sbjct 1032460 AACGTCTAATGTGATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510 >seq391 Length=841353 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | || | |||||||| || | || || || ||||||||||||||||| | Sbjct 250934 CCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGAC 250993 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || |||| ||| || || || |||||||| | || | ||||| ||||| || || Sbjct 250994 AATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGGA 251053 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || || || |||||| ||| || ||| | ||| || | ||| || Sbjct 251054 ATCCCTTCTTTATCCTGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTACT 251113 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | | |||| || |||| ||||||||||||||| ||||| Sbjct 251114 TCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 >seq558 Length=611125 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | || || |||||||| || || |||||||| ||||||||||| || Sbjct 303941 ACCGCCGCGCAGTCGCAGTACCAAGTGAATAGTGGACTCTTTCTGAATGTTGTAGTCCGC 303882 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| || |||||||| || || || |||| | |||||||| || || || Sbjct 303881 GAGCGTGCGTCCGTCGTCGAGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCGG 303822 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 |||||||| ||||| || || ||| || |||| ||||| | || || Sbjct 303821 AATGCCCTCTTTGTCCTGGATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCAC 303762 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || | | ||||| || || || || ||||| |||||||| Sbjct 303761 TTCGAGCGTTATGTTCTTGCCCGTGAGTGTCTTGACAAATATCTGCAT 303714 >seq768 Length=1243675 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || |||||||||||| || ||||| ||||| |||||||| || | |||||| || Sbjct 1130710 CAGCACCAAGTGGATCGTCGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTC 1130769 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | ||| || || || | || ||||||||||| || || || |||||||||||||| Sbjct 1130770 ATCCAACTGCTTCCCGGCAAAAATCAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTGTC 1130829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433823410178824