Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1 134 2e-26 seq391 122 1e-22 >seq1 Length=3593316 Score = 134 bits (148), Expect = 2e-26 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||||| |||||||||||||| || |||||||| || |||||||| | Sbjct 1031598 TTCCACCACGAAGTCGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCGG 1031657 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | |||| | ||| || ||||||||||| ||||| ||||| | |||||||| || | Sbjct 1031658 ACAATGTTCGACCATCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTG 1031717 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| |||||||| ||||| |||||| || ||| | Sbjct 1031718 GAATACCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCGATAGTATCCGATGGTTCCA 1031777 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| | ||||| |||||||| || |||||||| | ||| ||||||||| Sbjct 1031778 CTTCCAAGGTGATGGTTTTACCGGTCAATGTTTTTACGAAAATTTGCATT 1031827 Score = 125 bits (138), Expect = 1e-23 Identities = 101/122 (83%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 |||||||||||||| || |||||||| |||||||||||| || | |||| || ||| Sbjct 1033042 AATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGACAATGTTCGGCCATCT 1033101 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | |||||| |||||||| ||||||| ||||||||| || ||||| ||||||||||| Sbjct 1033102 TCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGAATACCTTCTTTATCC 1033161 Query 146186 TG 146187 || Sbjct 1033162 TG 1033163 Score = 123 bits (136), Expect = 4e-23 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATT-CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 ||||||||||| || || |||| |||| || ||||||||||| || | ||| | | ||| Sbjct 1033270 AATACCAAATGCAATGTTGATTCCTTTTGA-ATATTATAATCGGACAAAGTACGACCATC 1033328 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 || |||||||| |||||||| ||||||| ||||||||| || ||||| ||||||||||| Sbjct 1033329 TTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGAATGCCTTCTTTATC 1033388 Query 146185 TTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGT 146244 ||| || || || ||| ||||| | ||||| || Sbjct 1033389 TTGAATTTTGGCTTTAACATTTTCGATGGTGTCCGATGGTTCGACTTCCAAAGTGATGGT 1033448 Query 146245 TTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||| || |||||||| | ||| |||||||| Sbjct 1033449 TTTACCAGTCAATGTTTTTACGAAGATTTGCAT 1033481 Score = 107 bits (118), Expect = 3e-18 Identities = 224/327 (69%), Gaps = 9/327 (3%) Strand=Plus/Plus Query 209102 GTTCATGAATATGGTGATGTGAGTAATGGTTGTACATCAGCAGGAGAACATTTTAATCCA 209161 |||||||||| |||||| | |||||||||||||| || || | |||| ||||||| Sbjct 603596 GTTCATGAATTTGGTGACAATACAAATGGTTGTACATCGGCTGGTGCTCATTATAATCCA 603655 Query 209162 TATAATAGACAACATGGAGATATTAGTGATAAAATACATCGTCATGTTGGTGATTTTGGT 209221 | |||| | |||||| | ||||||| | | | ||||||||||||||||| || Sbjct 603656 TTGAATAAAACACATGGTGCACCTAGTGATGA---AGAACGTCATGTTGGTGATTTAGGC 603712 Query 209222 AATGTGTATGCAGACGAAAATGGCGTTGCTAATATTGATTTTCACGATGATATTATATCA 209281 ||| | | || | || || || ||||||||| ||| || | ||| |||| |||| Sbjct 603713 AATATTGAAGCCAATGATAAAGGTGTTGCTAATGTTGTAATTGAAGAT-TCATTA-ATCA 603770 Query 209282 --TTGTGTGG-AACAAATAATATAATAGGAAGAACATTAGTAGTTCATGATTCGCCTGAT 209338 ||| ||| | |||| | || | ||| | |||| || || |||| | || ||| Sbjct 603771 GTTTGACTGGTGAAAAATCA-ATTGTTGGACGTTCATTGGTTGTACATGCTGATCCAGAT 603829 Query 209339 GATTTAGGAAAAACTGATCACCCTTTGAGTAAAACAAGTGGTAATTCTGGCGGAAGATTA 209398 ||| | ||| || || || || ||||||| |||||| | || ||| | | Sbjct 603830 GATCTTGGACGTGGTGGACATGAATTAAGCAAAACAACCGGTAATGCAGGTGGACGTCTT 603889 Query 209399 GGTTGTGGTATTATTGGTATTGCAAAA 209425 | ||||||| ||||||| || ||||| Sbjct 603890 GTTTGTGGTGTTATTGGCGTTACAAAA 603916 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||||||||| || |||||||| ||||| ||||| || | || | || ||| || Sbjct 1031846 ACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAATCGGATAAGGTACGGCCATCTTCC 1031905 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| ||||| |||||||| | ||||||||| || ||||| ||||| |||||||| Sbjct 1031906 AATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTATCTTG 1031964 Score = 107 bits (118), Expect = 3e-18 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 ||||||||||| ||||| || ||||| || || ||||| || | || | | ||| Sbjct 1032299 AATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCGATAATGTACGACCATCT 1032358 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 ||||||||||| || ||||| ||||| | |||||| || || |||||||| |||||||| Sbjct 1032359 TCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTGGAATTCCCTCTTTATCC 1032418 Query 146186 TGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTT 146245 || ||||| || ||| || |||| |||||| ||| Sbjct 1032419 TGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCAACGTCTAATGTGATGGTT 1032478 Query 146246 TTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || |||||||| | ||| |||||||| Sbjct 1032479 TTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 ||||| | ||| | || |||||||| || || ||||| || | |||| || ||| Sbjct 1032527 AATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGACAATGTTCGGCCATCT 1032586 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | ||||| ||||| |||||||| | |||||| || || |||||||||||||| ||| Sbjct 1032587 TCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTTGTCT 1032646 Query 146186 TG 146187 || Sbjct 1032647 TG 1032648 >seq391 Length=841353 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||||||| | || || || ||||| || |||||||| ||||| || ||||| Sbjct 251390 CCTCCTCTAAGCCGTAGCACTAAGTGTAACGTCGATTCTTTCTGGATATTGTAGTCTGAC 251449 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| ||| ||||||||||||||||||||||| |||| ||| ||||| || ||| Sbjct 251450 AAAGTTCTAGAATCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGTTGATCAGGCGGA 251509 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 251510 ATTCCTTCCTTATCCTG 251526 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||||||||| | || || ||||| || |||||||| ||||| || ||||| Sbjct 251162 CCACCTCTAAGTCGAAGCACTAAGTGTAATGTGGATTCTTTCTGGATATTGTAGTCTGAC 251221 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| ||| ||||| ||||||||||||||||| |||| || || || || ||| Sbjct 251222 AAAGTTCTAGAATCTTCTAACTGTTTTCCAGCAAAAATTAATCGCTGTTGGTCTGGCGGA 251281 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| || || Sbjct 251282 ATCCCTTCTTTGTCCTG 251298 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||||||| | | || ||||| | || |||||||| || || || || || Sbjct 730826 CCTCCTCTAAGACGAAGCACTAAATGAATTGTGGATTCTTTCTGGATGTTGTAGTCGGAT 730885 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | | || |||| ||| || ||||||||||| | ||||||||||||||| ||| Sbjct 730886 AAAGTGCGGTTGTCGTCTAGTTGCTTACCAGCAAAAATAAGTCTTTGCTGATCCGGGGGA 730945 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| ||||| Sbjct 730946 ATTCCTTCTTTGTCTTG 730962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743514113226240