Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq768 113 3e-20 seq558 105 4e-18 >seq768 Length=1243675 Score = 113 bits (124), Expect = 3e-20 Identities = 170/235 (72%), Gaps = 14/235 (6%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||||| |||||||| ||| | || || || || ||||||||||| | Sbjct 1130696 CCGCCACGCAGCCGCAGCACCAAGTGGATCGTCGACTCCTTTTGGATGTTGTAGTCCGCG 1130755 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || |||| ||||||||||| || || ||||| || ||||||||||| || Sbjct 1130756 AGCGTGCGCCCGTCATCCAACTGCTTCCCGGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1130815 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCG-GTCGATTCGAC 34341 | || ||||||||| ||| || ||||| || ||| ||| |||| |||| || | Sbjct 1130816 ATGCCCTCCTTGTCCTGGATC-TTAGCTTT-GA--CGCTCTCG-ATCGTGTCGTTTGG-- 1130868 Query 34342 GTCCACC------GTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||| |||||| | || || ||||| || ||||| ||||| |||||| Sbjct 1130869 GTCCACCTCAAGGGTGATGTTCTTCCCCGTGAGCGTCTTCACGAAGATTTGCATC 1130923 >seq558 Length=611125 Score = 105 bits (116), Expect = 4e-18 Identities = 167/233 (72%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||| |||| ||| | ||| |||||||| ||||||||||| | Sbjct 303940 CCGCCGCGCAGTCGCAGTACCAAGTGAATAGTGGACTCTTTCTGAATGTTGTAGTCCGCG 303881 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || ||||||| | |||||| || || || || | ||||||||||| || Sbjct 303880 AGCGTGCGTCCGTCGTCGAGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCGGA 303821 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCG-GTCGAT----T 34337 | || ||| ||||| ||| || ||||| || ||| ||| |||| |||| | | Sbjct 303820 ATGCCCTCTTTGTCCTGGATC-TTAGCTTT-GA--CGCTCTCG-ATCGTGTCGTTTGGGT 303766 Query 34338 CGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | || || | ||| ||| | ||||| ||||| || || ||||| ||||||||| Sbjct 303765 CCACTTCGAGCGTTATGTTCTTGCCCGTGAGTGTCTTGACAAATATCTGCATC 303713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323066794704320