Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1 405 5e-108 seq990 109 5e-19 >seq1 Length=3593316 Score = 405 bits (448), Expect = 5e-108 Identities = 626/882 (71%), Gaps = 14/882 (2%) Strand=Plus/Minus Query 15942 TTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATAT 16001 ||||||||||||| ||| | |||||||| ||||||| ||| ||||||||||| || | Sbjct 930119 TTTTTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCTTCTAATGATATTT 930060 Query 16002 TTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACA 16061 ||||||||||||||| |||||| ||| ||| | ||| || || | ||||| | || Sbjct 930059 GTTCCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACAATCTAATTCAACCA 930000 Query 16062 ATAATCTATCCGCCACAA-ATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 |||| | ||| || |||| |||| ||||| | |||||| | | ||||| || || Sbjct 929999 ATAAACGATCGGC-ACAATATTCAATATAATCGGACATTAATTTAGCATTCATACCGATC 929941 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 ||| || || | ||| || || | ||| | || ||| |||||||| || ||||| || Sbjct 929940 AATGATACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACAGCATCAATAATA 929881 Query 16181 ATATCTCTTACTACACTATT-TAACGGAGGGTTT--AATAAGTGTTTAAACATTATACAA 16237 || || | | | | | | | ||| | || |||| || | ||||| | ||| Sbjct 929880 ATTTCAACAATT-CGTTGTGATGATGGACGATTACGAATA--TGATGAAACAAAAGACAG 929824 Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297 |||||||||||||| |||||||| || | || || || |||||||| |||||||| Sbjct 929823 GCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAAAAGGTAAGACCA 929764 Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357 |||||||| || |||||||| | |||||| || || ||||||||||| ||||| ||||| Sbjct 929763 GGCATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCGGAAAAAAATATT 929704 Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatc 16417 |||||||| || |||||||||| || || || | | || | | || | || Sbjct 929703 CCTTCAACAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGAATCATCTTGTGTC 929644 Query 16418 cattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAAT 16477 || | ||||||| || ||||||| | ||||| | || ||| ||||| ||| Sbjct 929643 CAACGTATAGCCCATTTAGCTTTTTTCTCTACACAAGGTAGATTACGTATAGCATTGAAT 929584 Query 16478 AAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCT 16537 | | ||| || ||| || | ||| | | ||| |||| || | ||| |||||||||| Sbjct 929583 AGAAAATCTTGTTCATTACGATCCGATACATAGGTATTAATCAATAATGAATACATTTCT 929524 Query 16538 GAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGT 16597 ||||||| ||| || || || || ||||| |||||||| || | ||||| | ||||||| Sbjct 929523 GAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTGCTTCTGGTATTTGT 929464 Query 16598 ACTTCA-GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656 || ||| || ||||| | ||| ||||| ||||| ||||| || ||||| || || ||||| Sbjct 929463 ACATCACGAATAAAA-CGTTCAGCTAAATTTTCATTAACAATACCATCACTTGCAGCAAA 929405 Query 16657 AAACGCAAGTATGTGTTTAATAAAAtttttttCGTT--ATCTGAAAGTTTTAACCAGTCA 16714 ||| || | || ||| ||| |||| |||||| || | | || ||| ||| | Sbjct 929404 AAAAGCCAATACATGTGAAATGAAATGTTTTTCATTCGAATTTAA--TTTATTCCAATGT 929347 Query 16715 GAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTA 16774 || ||| | || ||| || ||||| || |||||||| || || |||| ||||| Sbjct 929346 ACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATGCTTCAGCTTTTTTG 929287 Query 16775 TACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 |||||| |||| || || | || ||| ||||||| |||| Sbjct 929286 TACATTGTCCAAATATCATGATATTGAATTGGAAACAAAACA 929245 >seq990 Length=1130841 Score = 109 bits (120), Expect = 5e-19 Identities = 339/520 (65%), Gaps = 16/520 (3%) Strand=Plus/Minus Query 16250 TGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCT 16309 |||| |||||||| || || | ||||| ||| || | ||| || | || || Sbjct 1099370 TGCATGCCTTCGTCTCTCGAAATCAGTTCGTTACTAAACGTCAAACCAGGAAGCAGACCG 1099311 Query 16310 CGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCG 16369 |||||||| ||||| || || ||| ||| ||||| ||| || || || || ||||| Sbjct 1099310 CGTTTTTTCATCCAGAAAATGGCGCAAAAAGAACCGCTAAACAAAATTCCCTCGACTGCA 1099251 Query 16370 GCAAATGCAACCAATCGCTCACCG--TACGTTCT-Atttttactttctatccatttttta 16426 || || | ||| || ||| || | ||||| ||| ||| ||||| ||| | Sbjct 1099250 CAGAACGCTAGCAAGCGTTCAGCGATTGAGTTCTCATTATTA------ATCCACTTTAAA 1099197 Query 16427 gcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAttt 16486 |||||| |||||| || ||| || || | | ||| || ||| | | || Sbjct 1099196 GCCCAAAGCGCTTTTGATTCAACGGCTTTAATATGGTTTATAGCTCGAAAAATTTTTATT 1099137 Query 16487 ttttCTTTGCTATCTAAA---ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGA 16543 | ||||| || | | |||| ||| || || ||||||||| |||| || || Sbjct 1099136 TGTTCTTGCAGATTGGATTGCAAATAACAATCAATCAGCAAACTATACGTTTCAGAGTGG 1099077 Query 16544 ATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA 16603 ||||| ||||| || | |||||| | || || |||| ||| | | ||| | || Sbjct 1099076 ATATTTTCCATCGCCAACTGAAATGCGTAGAAATCTCTAATTTCAGGGACTTGAAACTCG 1099017 Query 16604 GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCA 16663 | |||| | | | | |||||| ||| ||||| || || |||||||||||||| Sbjct 1099016 AGGAAAAAACGACGTCCAATGTTTTCTAAAACGATTCCGTCACTTGCTGCAAAAAACGCC 1098957 Query 16664 AGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAAGTTTTAACCAGTCAGAAAAAT 16721 || | | |||||| ||| |||||||||| || | ||| | || ||| ||| | | Sbjct 1098956 AGCACATATTTAATGAAACTTTTTTCGTTCTCATTCAAATTATT--CCAATCACGCAGGT 1098899 Query 16722 CTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761 || | ||||| | ||||| | ||||||||| |||| Sbjct 1098898 CTCCATACAAATCTATTTCTTCAGCCGTCCAAAAACAAGC 1098859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462504356989200