Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq1 405 5e-108
seq990 109 5e-19
>seq1
Length=3593316
Score = 405 bits (448), Expect = 5e-108
Identities = 626/882 (71%), Gaps = 14/882 (2%)
Strand=Plus/Minus
Query 15942 TTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATAT 16001
||||||||||||| ||| | |||||||| ||||||| ||| ||||||||||| || |
Sbjct 930119 TTTTTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCTTCTAATGATATTT 930060
Query 16002 TTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACA 16061
||||||||||||||| |||||| ||| ||| | ||| || || | ||||| | ||
Sbjct 930059 GTTCCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACAATCTAATTCAACCA 930000
Query 16062 ATAATCTATCCGCCACAA-ATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120
|||| | ||| || |||| |||| ||||| | |||||| | | ||||| || ||
Sbjct 929999 ATAAACGATCGGC-ACAATATTCAATATAATCGGACATTAATTTAGCATTCATACCGATC 929941
Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180
||| || || | ||| || || | ||| | || ||| |||||||| || ||||| ||
Sbjct 929940 AATGATACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACAGCATCAATAATA 929881
Query 16181 ATATCTCTTACTACACTATT-TAACGGAGGGTTT--AATAAGTGTTTAAACATTATACAA 16237
|| || | | | | | | | ||| | || |||| || | ||||| | |||
Sbjct 929880 ATTTCAACAATT-CGTTGTGATGATGGACGATTACGAATA--TGATGAAACAAAAGACAG 929824
Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297
|||||||||||||| |||||||| || | || || || |||||||| ||||||||
Sbjct 929823 GCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAAAAGGTAAGACCA 929764
Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357
|||||||| || |||||||| | |||||| || || ||||||||||| ||||| |||||
Sbjct 929763 GGCATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCGGAAAAAAATATT 929704
Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatc 16417
|||||||| || |||||||||| || || || | | || | | || | ||
Sbjct 929703 CCTTCAACAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGAATCATCTTGTGTC 929644
Query 16418 cattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAAT 16477
|| | ||||||| || ||||||| | ||||| | || ||| ||||| |||
Sbjct 929643 CAACGTATAGCCCATTTAGCTTTTTTCTCTACACAAGGTAGATTACGTATAGCATTGAAT 929584
Query 16478 AAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCT 16537
| | ||| || ||| || | ||| | | ||| |||| || | ||| ||||||||||
Sbjct 929583 AGAAAATCTTGTTCATTACGATCCGATACATAGGTATTAATCAATAATGAATACATTTCT 929524
Query 16538 GAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGT 16597
||||||| ||| || || || || ||||| |||||||| || | ||||| | |||||||
Sbjct 929523 GAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTGCTTCTGGTATTTGT 929464
Query 16598 ACTTCA-GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656
|| ||| || ||||| | ||| ||||| ||||| ||||| || ||||| || || |||||
Sbjct 929463 ACATCACGAATAAAA-CGTTCAGCTAAATTTTCATTAACAATACCATCACTTGCAGCAAA 929405
Query 16657 AAACGCAAGTATGTGTTTAATAAAAtttttttCGTT--ATCTGAAAGTTTTAACCAGTCA 16714
||| || | || ||| ||| |||| |||||| || | | || ||| ||| |
Sbjct 929404 AAAAGCCAATACATGTGAAATGAAATGTTTTTCATTCGAATTTAA--TTTATTCCAATGT 929347
Query 16715 GAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTA 16774
|| ||| | || ||| || ||||| || |||||||| || || |||| |||||
Sbjct 929346 ACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATGCTTCAGCTTTTTTG 929287
Query 16775 TACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816
|||||| |||| || || | || ||| ||||||| ||||
Sbjct 929286 TACATTGTCCAAATATCATGATATTGAATTGGAAACAAAACA 929245
>seq990
Length=1130841
Score = 109 bits (120), Expect = 5e-19
Identities = 339/520 (65%), Gaps = 16/520 (3%)
Strand=Plus/Minus
Query 16250 TGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCT 16309
|||| |||||||| || || | ||||| ||| || | ||| || | || ||
Sbjct 1099370 TGCATGCCTTCGTCTCTCGAAATCAGTTCGTTACTAAACGTCAAACCAGGAAGCAGACCG 1099311
Query 16310 CGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCG 16369
|||||||| ||||| || || ||| ||| ||||| ||| || || || || |||||
Sbjct 1099310 CGTTTTTTCATCCAGAAAATGGCGCAAAAAGAACCGCTAAACAAAATTCCCTCGACTGCA 1099251
Query 16370 GCAAATGCAACCAATCGCTCACCG--TACGTTCT-Atttttactttctatccatttttta 16426
|| || | ||| || ||| || | ||||| ||| ||| ||||| ||| |
Sbjct 1099250 CAGAACGCTAGCAAGCGTTCAGCGATTGAGTTCTCATTATTA------ATCCACTTTAAA 1099197
Query 16427 gcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAttt 16486
|||||| |||||| || ||| || || | | ||| || ||| | | ||
Sbjct 1099196 GCCCAAAGCGCTTTTGATTCAACGGCTTTAATATGGTTTATAGCTCGAAAAATTTTTATT 1099137
Query 16487 ttttCTTTGCTATCTAAA---ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGA 16543
| ||||| || | | |||| ||| || || ||||||||| |||| || ||
Sbjct 1099136 TGTTCTTGCAGATTGGATTGCAAATAACAATCAATCAGCAAACTATACGTTTCAGAGTGG 1099077
Query 16544 ATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA 16603
||||| ||||| || | |||||| | || || |||| ||| | | ||| | ||
Sbjct 1099076 ATATTTTCCATCGCCAACTGAAATGCGTAGAAATCTCTAATTTCAGGGACTTGAAACTCG 1099017
Query 16604 GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCA 16663
| |||| | | | | |||||| ||| ||||| || || ||||||||||||||
Sbjct 1099016 AGGAAAAAACGACGTCCAATGTTTTCTAAAACGATTCCGTCACTTGCTGCAAAAAACGCC 1098957
Query 16664 AGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAAGTTTTAACCAGTCAGAAAAAT 16721
|| | | |||||| ||| |||||||||| || | ||| | || ||| ||| | |
Sbjct 1098956 AGCACATATTTAATGAAACTTTTTTCGTTCTCATTCAAATTATT--CCAATCACGCAGGT 1098899
Query 16722 CTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761
|| | ||||| | ||||| | ||||||||| ||||
Sbjct 1098898 CTCCATACAAATCTATTTCTTCAGCCGTCCAAAAACAAGC 1098859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462504356989200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |