Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq335 154 3e-32 >seq335 Length=939964 Score = 154 bits (170), Expect = 3e-32 Identities = 619/961 (64%), Gaps = 28/961 (3%) Strand=Plus/Plus Query 248782 CTGGACGGCGCGATTGACTACGGCAAA-GATTTGGAGTACGATTTCTTTGCTTTCAAAAC 248840 ||||||| ||||| | || |||| || || || |||| ||| | ||| | ||||| || Sbjct 178600 CTGGACGCGGCGATCGTCT-CGGCGAACGACTTCGAGTTCGACTACTTCGGCTTCAAGAC 178658 Query 248841 GCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACAT 248900 ||| ||| ||||| || || || | |||||||| || || ||| |||| Sbjct 178659 GCTCGAGCGCTCGTACCTGCTGAAGGCGAACAAAAAGATCGTCGAGCGGCCGCAGTACAT 178718 Query 248901 GTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTA 248960 ||| ||||| ||| | |||| ||| ||| || ||| | | | | | |||||||| Sbjct 178719 GTTCATGCGCGTGTCGGTCGCGATCCACTTGGGCGACTTGCCGCGGATTTTGGAGACGTA 178778 Query 248961 CACCGGAATGA-GTGAACGCTGGATGACA--CATGCCACACCGACGCTCTTCAACGCCGG 249017 | ||| ||| || | | | || || || || |||||||| ||||||||||| Sbjct 178779 C--CGGC-TGATGTCGAGCAAGTTTTTCATCCACGCGACGCCGACGCTGTTCAACGCCGG 178835 Query 249018 T----ACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTG 249073 | || ||||| ||| | |||||||| || ||| |||||||| Sbjct 178836 GCTGAAGCGGCAACA----GCTCTCCAGCTGCTTTCTGCTGCAGATGGCCGACGACTCGA 178891 Query 249074 TCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAA 249133 |||| ||||||| |||||||| || || ||| ||| || | ||| ||||| | Sbjct 178892 TCGAGGGCATTTTCGACACGCTGAAGGAGTGCGCGGTGATCAGCAAGTACGCTGGCGGGA 178951 Query 249134 TCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGG 249193 |||| ||| | || ||| ||||| |||| | |||||||| || || || ||| Sbjct 178952 TCGGGCTCGCGATCCACAAGATCCGCGCGACGAACGCGTACATCGCGGGCACGAACGGGC 179011 Query 249194 TCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACC 249253 ||| | || ||||| || | || || || | | ||||| | | | || ||| Sbjct 179012 GCAGCAACGGGATCGTGCCGATGCTGCGCGTGTTCAACGCGACCGCGCGCTACGTCGACC 179071 Query 249254 AGGCCGGGCGC---CG-AAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGAT 249309 ||| ||| || || ||||| | | ||||| || || |||| ||||||||| || Sbjct 179072 AGGGCGGCGGCAAGCGCAAAGGCGGC-TTCGCGATCTACCTGGAGCCGTGGCACGCAGAC 179130 Query 249310 ATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGAC 249369 || || |||||| | || || ||| |||||||||| || | |||| ||| Sbjct 179131 ATCTTCGAGTTCATCGAGCTGCGGCGCAACCACGGCAACGAAGAGTTGCGCACGCGGGAC 179190 Query 249370 CTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGAT 249429 |||||| || |||| || ||||||||||||||||||||| | | ||||||| Sbjct 179191 CTCTTCCTGGGGCTGTACATCAACGACTTGTTCATGCGCCGCGTGGACGAAGACGGCGTG 179250 Query 249430 TGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGCCGACTTC 249489 |||| || | | ||| | | | |||| | | |||| | ||||| || ||| Sbjct 179251 TGGAGTCTGATGTGTCCCGCGCAGTCGCCGGGCTTGTTCGAAGTCTGGGGCGCGGAGTTC 179310 Query 249490 GACCAAGCCTATAAGAAATACGAATCCAACGGCATCG----GCAAGACA-ATCAAGGCTC 249544 ||| || | | ||||| || | ||| || | | || | ||||| | Sbjct 179311 GACGCGCTGTACACGCGCTACGAGGCCGA--GCAGCGCTTCGTGCGGCAGGTGAAGGCGC 179368 Query 249545 GGACCCTTTTTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGT 249604 | | || | || | ||| | | ||||| ||||| || ||||| | ||| Sbjct 179369 GCGCGCTCTGGACGGTCATTGTGAACACGCAGATCGAGACGGGCAATCCGTACTTGGTGT 179428 Query 249605 TCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAA 249664 ||| |||||||||||| |||| ||||| ||| | || || ||||||| || || | Sbjct 179429 ACAAGGACGCGTGCAACCGCAAGTCGAACCAGCGGAACCTCGGCACCATCCAGTCCTCGA 179488 Query 249665 ATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGG 249724 | || || | || ||| | || ||| |||| |||||||| || || |||||||| | Sbjct 179489 ACCTGTGCACGGAAGTGGTGCAGTACACGTCGCGCGAGGAGATCGCGGTGTGCAACCTCG 179548 Query 249725 C 249725 | Sbjct 179549 C 179549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073748212410496