Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1 394 9e-105 seq990 91.5 1e-13 >seq1 Length=3593316 Score = 394 bits (436), Expect = 9e-105 Identities = 664/944 (70%), Gaps = 24/944 (3%) Strand=Plus/Minus Query 13856 TAAAAATCAACATC--TAACGAAAAAACATTATCGTCT--TTGTTAGAAATAACGCCCAT 13911 ||||||||| |||| |||| ||| || | ||| || | || || || || || | Sbjct 930174 TAAAAATCAGCATCGGTAAC--AAATACCTGATCTTCAGGTCGT--GACATGACACCACT 930119 Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 |||||||||||| ||| | ||||||||| || || | ||||||||| | |||||| | Sbjct 930118 TTTTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCTTCTAATGATATTTG 930059 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAG 14031 |||||||||||||||||||||||||| || | ||| |||||| ||| ||| | | Sbjct 930058 TTCCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACAATCTAATTCAACCAA 929999 Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091 ||| | ||| ||| | |||||||| | |||||||| | | ||||||||| || | Sbjct 929998 TAAACGATCGGCACAATATTCAATATAATCGGACATTAATTTAGCATTCATACCGATCAA 929939 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 | ||| || | | || ||| | |||||||| ||| ||| ||||| || ||||| Sbjct 929938 TGATACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACAGCATC---AATAAT 929882 Query 14152 AATCGTAATAATT--TCATTA-GAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGC 14208 ||| || |||| | | | || ||| ||| | ||| | ||| | | ||| || Sbjct 929881 AATTTCAACAATTCGTTGTGATGATGGACGATTACGAATATGATGAAACAAAAGACAGGC 929822 Query 14209 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 14268 |||||||||||| | || ||||| | ||| | ||| |||||||| || | || || Sbjct 929821 AAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAAAAGGTAAGACCAGG 929762 Query 14269 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 14328 ||| | || |||||||||| |||||| ||||| || ||||| |||||||| |||||||| Sbjct 929761 CATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCGGAAAAAAATATTCC 929702 Query 14329 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCA 14388 ||||| |||||||| || ||||| ||||| |||| | | | | | |||| Sbjct 929701 TTCAACAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGAATCATCTTGTGTCCA 929642 Query 14389 TTTTCTAGCCCATTCAGAtttttt-tttA-ATAAAATCCATTGTTTCAATAGCATTAAAT 14446 | ||||||||| || |||||| | || | || | ||| | |||||||| ||| Sbjct 929641 ACGTATAGCCCATTTAGCTTTTTTCTCTACACAAGGTAGATTACGT--ATAGCATTGAAT 929584 Query 14447 AAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14506 | | || | || ||| | || | || |||| ||| | ||| ||||||||| Sbjct 929583 AGAAAATCTTGTTCATTACGATCCGATACATAGGTATTAATCAATAATGAATACATTTCT 929524 Query 14507 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14566 || || | ||||| ||||| || ||||| ||||||||||| | ||||||| |||| Sbjct 929523 GAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTGCTTCTGGTATTTGT 929464 Query 14567 ACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625 || || || ||||| | ||| || |||||||||||||| ||||||||||| || ||||| Sbjct 929463 ACATCACGAATAAAA-CGTTCAGCTAAATTTTCATTAACAATACCATCACTTGCAGCAAA 929405 Query 14626 AAATGCCAATATGTTTTTAATAAAGTATTGCTC-TTC-ATTGCTGAGTTTTTTCCAATCG 14683 ||| ||||||| | | ||| || | || || ||| | | | | ||| ||||||| Sbjct 929404 AAAAGCCAATACATGTGAAATGAAATGTTTTTCATTCGAAT--TTAATTTATTCCAATGT 929347 Query 14684 GCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTA 14743 | | ||| | ||||||||||| |||||||||||||| || |||||||||| Sbjct 929346 ACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATGCTTCAGCTTTTTTG 929287 Query 14744 TACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787 |||||| ||| || || | |||| || ||||| | ||||| Sbjct 929286 TACATTGTCCAAATATCATGATATTGAATTGGAAACAAAACAAA 929243 >seq990 Length=1130841 Score = 91.5 bits (100), Expect = 1e-13 Identities = 340/521 (65%), Gaps = 28/521 (5%) Strand=Plus/Minus Query 14224 GCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttt 14283 ||| || ||||| ||| |||||||| ||| || || || || | || || ||||| Sbjct 1099365 GCCTTCGTCTCTCGAAATCAGTTCGTTACTAAACGTCAAACCAGGAAGCAGACCGCGTTT 1099306 Query 14284 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14343 ||| | ||| || || || || || ||| ||| || |||||||| |||||| || Sbjct 1099305 TTTCATCCAGAAAATGGCGCAAAAAGAACCGCTAAACAAAATTCCCTCGACTGCACAGAA 1099246 Query 14344 CGCTATTAATCGTTCTCCAAACGAT-GCTTTTTTGTTCGATATCCATTTTCTAGCCCATT 14402 ||||| || ||||| | |||| | || | || ||||| ||| |||||| Sbjct 1099245 CGCTAGCAAGCGTTC----AGCGATTGAGTTCTCATTATTAATCCACTTTAAAGCCCAAA 1099190 Query 14403 CAGAtttttttttAA----TAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTC 14458 | |||| || || | ||| || |||| ||||| ||| || | || || Sbjct 1099189 GCGCTTTTGATTCAACGGCTTTAAT--ATGGTTT--ATAGCTCGAAA-AATTTTTATTTG 1099135 Query 14459 TCTTTAGTACTTGAAATGTATGTA----TCAATAAGTAAGCTATACATTTCAGAGTGTAT 14514 | || ||| | || | || ||||| || || |||||| |||||||||| || Sbjct 1099134 TTCTTGCAGATTGGATTGCAAATAACAATCAATCAGCAAACTATACGTTTCAGAGTGGAT 1099075 Query 14515 GTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGA 14574 |||||||| || | |||||| | || ||| |||| ||| | ||| | ||| || Sbjct 1099074 ATTTTCCATCGCCAACTGAAATGCGTAGAAATCTCTAATTTCAGGGACTTGAAACTC-GA 1099016 Query 14575 GTAAAATCTTTCGGCCAAA-TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633 | |||| || |||| ||||| ||| || || ||||| ||||||||||| |||| Sbjct 1099015 GGAAAAAACGACGTCCAATGTTTTCTAAAACGATTCCGTCACTTGCTGCAAAAAACGCCA 1098956 Query 14634 ATATGTTTTTAAT-AAAGTATT---GCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAA 14689 | | |||||| ||| | || | || |||| | | || |||||||| | Sbjct 1098955 GCACATATTTAATGAAACTTTTTTCGTTC-TCAT---TCAAATTATTCCAATCACGCAGG 1098900 Query 14690 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14730 || | | | ||||| ||| ||| | |||||||||| ||| Sbjct 1098899 TCTCCATACAAATCTATTTCTTCAGCCGTCCAAAAACAAGC 1098859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482337629238960