Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq1 394 9e-105
seq990 91.5 1e-13
>seq1
Length=3593316
Score = 394 bits (436), Expect = 9e-105
Identities = 664/944 (70%), Gaps = 24/944 (3%)
Strand=Plus/Minus
Query 13856 TAAAAATCAACATC--TAACGAAAAAACATTATCGTCT--TTGTTAGAAATAACGCCCAT 13911
||||||||| |||| |||| ||| || | ||| || | || || || || || |
Sbjct 930174 TAAAAATCAGCATCGGTAAC--AAATACCTGATCTTCAGGTCGT--GACATGACACCACT 930119
Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971
|||||||||||| ||| | ||||||||| || || | ||||||||| | |||||| |
Sbjct 930118 TTTTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCTTCTAATGATATTTG 930059
Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAG 14031
|||||||||||||||||||||||||| || | ||| |||||| ||| ||| | |
Sbjct 930058 TTCCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACAATCTAATTCAACCAA 929999
Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091
||| | ||| ||| | |||||||| | |||||||| | | ||||||||| || |
Sbjct 929998 TAAACGATCGGCACAATATTCAATATAATCGGACATTAATTTAGCATTCATACCGATCAA 929939
Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151
| ||| || | | || ||| | |||||||| ||| ||| ||||| || |||||
Sbjct 929938 TGATACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACAGCATC---AATAAT 929882
Query 14152 AATCGTAATAATT--TCATTA-GAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGC 14208
||| || |||| | | | || ||| ||| | ||| | ||| | | ||| ||
Sbjct 929881 AATTTCAACAATTCGTTGTGATGATGGACGATTACGAATATGATGAAACAAAAGACAGGC 929822
Query 14209 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 14268
|||||||||||| | || ||||| | ||| | ||| |||||||| || | || ||
Sbjct 929821 AAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAAAAGGTAAGACCAGG 929762
Query 14269 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 14328
||| | || |||||||||| |||||| ||||| || ||||| |||||||| ||||||||
Sbjct 929761 CATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCGGAAAAAAATATTCC 929702
Query 14329 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCA 14388
||||| |||||||| || ||||| ||||| |||| | | | | | ||||
Sbjct 929701 TTCAACAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGAATCATCTTGTGTCCA 929642
Query 14389 TTTTCTAGCCCATTCAGAtttttt-tttA-ATAAAATCCATTGTTTCAATAGCATTAAAT 14446
| ||||||||| || |||||| | || | || | ||| | |||||||| |||
Sbjct 929641 ACGTATAGCCCATTTAGCTTTTTTCTCTACACAAGGTAGATTACGT--ATAGCATTGAAT 929584
Query 14447 AAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14506
| | || | || ||| | || | || |||| ||| | ||| |||||||||
Sbjct 929583 AGAAAATCTTGTTCATTACGATCCGATACATAGGTATTAATCAATAATGAATACATTTCT 929524
Query 14507 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14566
|| || | ||||| ||||| || ||||| ||||||||||| | ||||||| ||||
Sbjct 929523 GAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTGCTTCTGGTATTTGT 929464
Query 14567 ACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625
|| || || ||||| | ||| || |||||||||||||| ||||||||||| || |||||
Sbjct 929463 ACATCACGAATAAAA-CGTTCAGCTAAATTTTCATTAACAATACCATCACTTGCAGCAAA 929405
Query 14626 AAATGCCAATATGTTTTTAATAAAGTATTGCTC-TTC-ATTGCTGAGTTTTTTCCAATCG 14683
||| ||||||| | | ||| || | || || ||| | | | | ||| |||||||
Sbjct 929404 AAAAGCCAATACATGTGAAATGAAATGTTTTTCATTCGAAT--TTAATTTATTCCAATGT 929347
Query 14684 GCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTA 14743
| | ||| | ||||||||||| |||||||||||||| || ||||||||||
Sbjct 929346 ACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATGCTTCAGCTTTTTTG 929287
Query 14744 TACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787
|||||| ||| || || | |||| || ||||| | |||||
Sbjct 929286 TACATTGTCCAAATATCATGATATTGAATTGGAAACAAAACAAA 929243
>seq990
Length=1130841
Score = 91.5 bits (100), Expect = 1e-13
Identities = 340/521 (65%), Gaps = 28/521 (5%)
Strand=Plus/Minus
Query 14224 GCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttt 14283
||| || ||||| ||| |||||||| ||| || || || || | || || |||||
Sbjct 1099365 GCCTTCGTCTCTCGAAATCAGTTCGTTACTAAACGTCAAACCAGGAAGCAGACCGCGTTT 1099306
Query 14284 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14343
||| | ||| || || || || || ||| ||| || |||||||| |||||| ||
Sbjct 1099305 TTTCATCCAGAAAATGGCGCAAAAAGAACCGCTAAACAAAATTCCCTCGACTGCACAGAA 1099246
Query 14344 CGCTATTAATCGTTCTCCAAACGAT-GCTTTTTTGTTCGATATCCATTTTCTAGCCCATT 14402
||||| || ||||| | |||| | || | || ||||| ||| ||||||
Sbjct 1099245 CGCTAGCAAGCGTTC----AGCGATTGAGTTCTCATTATTAATCCACTTTAAAGCCCAAA 1099190
Query 14403 CAGAtttttttttAA----TAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTC 14458
| |||| || || | ||| || |||| ||||| ||| || | || ||
Sbjct 1099189 GCGCTTTTGATTCAACGGCTTTAAT--ATGGTTT--ATAGCTCGAAA-AATTTTTATTTG 1099135
Query 14459 TCTTTAGTACTTGAAATGTATGTA----TCAATAAGTAAGCTATACATTTCAGAGTGTAT 14514
| || ||| | || | || ||||| || || |||||| |||||||||| ||
Sbjct 1099134 TTCTTGCAGATTGGATTGCAAATAACAATCAATCAGCAAACTATACGTTTCAGAGTGGAT 1099075
Query 14515 GTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGA 14574
|||||||| || | |||||| | || ||| |||| ||| | ||| | ||| ||
Sbjct 1099074 ATTTTCCATCGCCAACTGAAATGCGTAGAAATCTCTAATTTCAGGGACTTGAAACTC-GA 1099016
Query 14575 GTAAAATCTTTCGGCCAAA-TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633
| |||| || |||| ||||| ||| || || ||||| ||||||||||| ||||
Sbjct 1099015 GGAAAAAACGACGTCCAATGTTTTCTAAAACGATTCCGTCACTTGCTGCAAAAAACGCCA 1098956
Query 14634 ATATGTTTTTAAT-AAAGTATT---GCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAA 14689
| | |||||| ||| | || | || |||| | | || |||||||| |
Sbjct 1098955 GCACATATTTAATGAAACTTTTTTCGTTC-TCAT---TCAAATTATTCCAATCACGCAGG 1098900
Query 14690 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14730
|| | | | ||||| ||| ||| | |||||||||| |||
Sbjct 1098899 TCTCCATACAAATCTATTTCTTCAGCCGTCCAAAAACAAGC 1098859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482337629238960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |