Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1 131 1e-25 seq391 102 6e-17 >seq1 Length=3593316 Score = 131 bits (144), Expect = 1e-25 Identities = 181/248 (73%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 18080 TACATTTTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTT 18139 ||||| || ||| ||| ||| || || |||| | ||||| || | ||| |||||||| Sbjct 1031583 TACATCTTGTTTA-GTT-TCCACCACGAAGTCGCAATACCAAATGTAATGTCGATTCTTT 1031640 Query 18140 TTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAG 18199 ||| ||||| || |||| || |||| || ||||||||||||||| || ||| |||| | Sbjct 1031641 TTGGATGTTATAATCGGACAATGTTCGACCATCTTCCAATTGTTTTCCGGCAAAGATCAA 1031700 Query 18200 TCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAA 18258 | || ||||| || | ||||| || || |||| |||| ||||| | | | | Sbjct 1031701 ACGCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGGATTT-TTGCTTTGACATTTTCGA 1031759 Query 18259 CAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAA 18318 ||| || || || ||| | ||||||| |||| ||||||||||||||||| |||| Sbjct 1031760 TAGTATCCGATGGTTCCACTTCCAAGGTGATGGTTTTACCGGTCAATGTTTTTACGAAAA 1031819 Query 18319 TTTGCATT 18326 |||||||| Sbjct 1031820 TTTGCATT 1031827 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | | ||||| || | ||||||||| |||||||| || || |||| | Sbjct 1033255 CCGCCACGTAGACGCAATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCGGAC 1033314 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || ||| |||| | || ||| ||||| || Sbjct 1033315 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGA 1033374 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||| ||||| ||||| | || || || | | | | ||||| || ||| Sbjct 1033375 ATGCCTTCTTTATCTTGAATTT-TGGCTTTAACATTTTCGATGGTGTCCGATGGTTCGAC 1033433 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| |||| || |||||||||||||| || |||||||| Sbjct 1033434 TTCCAAAGTGATGGTTTTACCAGTCAATGTTTTTACGAAGATTTGCAT 1033481 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || |||| | | ||||| || | || ||||||||||| || || || || | Sbjct 1033026 TCCACCACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGA 1033085 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || |||| | |||||| | |||||| || ||| |||| | || ||| ||||| || Sbjct 1033086 CAATGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGG 1033145 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| ||||| |||| | || || || | | | | |||||| || ||| Sbjct 1033146 AATACCTTCTTTATCCTGGATTT-TAGCTTTCACATTTTCGATAGTGTCCGATGGTTCGA 1033204 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| ||||||| ||||| |||||||| ||||||||||| Sbjct 1033205 CTTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| || | ||| ||||| |||||||||||||| |||| || ||| | | ||||||| Sbjct 1032074 ACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGGACAAAGTTCTTCCATCTTCC 1032133 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | || ||| ||||| ||| | || || || || Sbjct 1032134 AATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCCTCTTTGTCCTGG 1032193 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| | || || || | | | | || ||| |||||| ||| | || || |||| Sbjct 1032194 ATTT-TGGCTTTTACATTTTCGATCGTATCAGATGGCTCGACTTCCAATGTAATAGTTTT 1032252 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| | ||||| || ||||||||||| Sbjct 1032253 ACCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | | ||||| || | ||||| |||||||| |||||||| || | Sbjct 1032284 CCACCACGTAGACGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCGAT 1032343 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || |||||| |||||||| || ||| |||| | | ||| || || || Sbjct 1032344 AATGTACGACCATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTGGA 1032403 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || || ||||| ||||| | ||| || | | | | || ||| || || Sbjct 1032404 ATTCCCTCTTTATCCTGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCAACG 1032463 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| |||| || ||||||||||| || ||||||||||| Sbjct 1032464 TCTAATGTGATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || |||| || | ||| | |||||||| |||||||||||||||||||| || | | Sbjct 1032512 CCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGAC 1032571 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | |||||| | |||||||| || | || | | ||| || || || Sbjct 1032572 AATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGA 1032631 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || || |||| |||||| | | ||| || || ||| || | Sbjct 1032632 ATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCACT 1032691 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || ||| |||| || ||||| ||||| |||||||| ||||| Sbjct 1032692 TCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 >seq391 Length=841353 Score = 102 bits (112), Expect = 6e-17 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 18091 TTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGT 18150 ||||| ||||| | || | || || | ||| | || |||||||| || || |||| Sbjct 251382 TTTGTATACCTCCTCTAAGCCGTAGCACTAAGTGTAACGTCGATTCTTTCTGGATATTGT 251441 Query 18151 AGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGAT 18210 |||| | || ||| || ||||||| |||||||| || ||| | || | || |||||||| Sbjct 251442 AGTCTGACAAAGTTCTAGAATCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGTTGAT 251501 Query 18211 CCACGGGCACGCCTTCCTTATCGGCAATTT--GTTGCTTGACCTGTGCAACAGTGTCACC 18268 | || | ||||||||||| ||||| ||| || || | | ||| |||||| Sbjct 251502 CAGGCGGAATTCCTTCCTTATCCTGAATTTTCGTT--TTCACATTTTCAATTGTGTCAGT 251559 Query 18269 GGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| || |||| | || |||| || || |||||||||||||| || ||||| Sbjct 251560 GGGTTCTACCTCAAGCGAAATATTTTTACCTGTTAATGTTTTTACAAATATCTGCAT 251616 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| ||| || | ||| | ||| |||||||| || || |||||||| | || ||| || Sbjct 251171 AGTCGAAGCACTAAGTGTAATGTGGATTCTTTCTGGATATTGTAGTCTGACAAAGTTCTA 251230 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 ||||||| || ||||| || ||| | || | || ||||| || || | ||||| Sbjct 251231 GAATCTTCTAACTGTTTTCCAGCAAAAATTAATCGCTGTTGGTCTGGCGGAATCCCTTCT 251290 Query 18228 TTATCGGCAATTTGTTGCTTGAC-CTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 || || ||||| ||| || || | ||| |||||| ||| ||| ||| | | Sbjct 251291 TTGTCCTGAATTTTCATCTTTACACTCT-CAATAGTGTCGTTGGGTTCGACTTCCAAAGA 251349 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||| || || || || |||||||||||||| || Sbjct 251350 TATATTTTTTCCTGTTAAGGTCTTTACAAAAATTTGTAT 251388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379337888056890