Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq1 131 1e-25
seq391 102 6e-17
>seq1
Length=3593316
Score = 131 bits (144), Expect = 1e-25
Identities = 181/248 (73%), Gaps = 4/248 (2%)
Strand=Plus/Plus
Query 18080 TACATTTTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTT 18139
||||| || ||| ||| ||| || || |||| | ||||| || | ||| ||||||||
Sbjct 1031583 TACATCTTGTTTA-GTT-TCCACCACGAAGTCGCAATACCAAATGTAATGTCGATTCTTT 1031640
Query 18140 TTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAG 18199
||| ||||| || |||| || |||| || ||||||||||||||| || ||| |||| |
Sbjct 1031641 TTGGATGTTATAATCGGACAATGTTCGACCATCTTCCAATTGTTTTCCGGCAAAGATCAA 1031700
Query 18200 TCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAA 18258
| || ||||| || | ||||| || || |||| |||| ||||| | | | |
Sbjct 1031701 ACGCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGGATTT-TTGCTTTGACATTTTCGA 1031759
Query 18259 CAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAA 18318
||| || || || ||| | ||||||| |||| ||||||||||||||||| ||||
Sbjct 1031760 TAGTATCCGATGGTTCCACTTCCAAGGTGATGGTTTTACCGGTCAATGTTTTTACGAAAA 1031819
Query 18319 TTTGCATT 18326
||||||||
Sbjct 1031820 TTTGCATT 1031827
Score = 120 bits (132), Expect = 2e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || ||||| | | ||||| || | ||||||||| |||||||| || || |||| |
Sbjct 1033255 CCGCCACGTAGACGCAATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCGGAC 1033314
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || || ||||||||||||||| || ||| |||| | || ||| ||||| ||
Sbjct 1033315 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGA 1033374
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| |||||| ||||| ||||| | || || || | | | | ||||| || |||
Sbjct 1033375 ATGCCTTCTTTATCTTGAATTT-TGGCTTTAACATTTTCGATGGTGTCCGATGGTTCGAC 1033433
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | |||||| |||| || |||||||||||||| || ||||||||
Sbjct 1033434 TTCCAAAGTGATGGTTTTACCAGTCAATGTTTTTACGAAGATTTGCAT 1033481
Score = 95.1 bits (104), Expect = 9e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || |||| | | ||||| || | || ||||||||||| || || || || |
Sbjct 1033026 TCCACCACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGA 1033085
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
|| |||| | |||||| | |||||| || ||| |||| | || ||| ||||| ||
Sbjct 1033086 CAATGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGG 1033145
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276
| ||||| ||||| |||| | || || || | | | | |||||| || |||
Sbjct 1033146 AATACCTTCTTTATCCTGGATTT-TAGCTTTCACATTTTCGATAGTGTCCGATGGTTCGA 1033204
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | || ||| ||||||| ||||| |||||||| |||||||||||
Sbjct 1033205 CTTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253
Score = 93.3 bits (102), Expect = 3e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| || | ||| ||||| |||||||||||||| |||| || ||| | | |||||||
Sbjct 1032074 ACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGGACAAAGTTCTTCCATCTTCC 1032133
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
||||| || || ||| |||| | || ||| ||||| ||| | || || || ||
Sbjct 1032134 AATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCCTCTTTGTCCTGG 1032193
Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295
|||| | || || || | | | | || ||| |||||| ||| | || || ||||
Sbjct 1032194 ATTT-TGGCTTTTACATTTTCGATCGTATCAGATGGCTCGACTTCCAATGTAATAGTTTT 1032252
Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| | ||||| || |||||||||||
Sbjct 1032253 ACCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || ||||| | | ||||| || | ||||| |||||||| |||||||| || |
Sbjct 1032284 CCACCACGTAGACGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCGAT 1032343
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| || |||||| |||||||| || ||| |||| | | ||| || || ||
Sbjct 1032344 AATGTACGACCATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTGGA 1032403
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| || || ||||| ||||| | ||| || | | | | || ||| || ||
Sbjct 1032404 ATTCCCTCTTTATCCTGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCAACG 1032463
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | |||||| |||| || ||||||||||| || |||||||||||
Sbjct 1032464 TCTAATGTGATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || |||| || | ||| | |||||||| |||||||||||||||||||| || | |
Sbjct 1032512 CCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGAC 1032571
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| |||| | |||||| | |||||||| || | || | | ||| || || ||
Sbjct 1032572 AATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGA 1032631
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||||| || || |||| |||||| | | ||| || || ||| || |
Sbjct 1032632 ATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCACT 1032691
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | || ||| |||| || ||||| ||||| |||||||| |||||
Sbjct 1032692 TCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738
>seq391
Length=841353
Score = 102 bits (112), Expect = 6e-17
Identities = 166/237 (70%), Gaps = 4/237 (2%)
Strand=Plus/Plus
Query 18091 TTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGT 18150
||||| ||||| | || | || || | ||| | || |||||||| || || ||||
Sbjct 251382 TTTGTATACCTCCTCTAAGCCGTAGCACTAAGTGTAACGTCGATTCTTTCTGGATATTGT 251441
Query 18151 AGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGAT 18210
|||| | || ||| || ||||||| |||||||| || ||| | || | || ||||||||
Sbjct 251442 AGTCTGACAAAGTTCTAGAATCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGTTGAT 251501
Query 18211 CCACGGGCACGCCTTCCTTATCGGCAATTT--GTTGCTTGACCTGTGCAACAGTGTCACC 18268
| || | ||||||||||| ||||| ||| || || | | ||| ||||||
Sbjct 251502 CAGGCGGAATTCCTTCCTTATCCTGAATTTTCGTT--TTCACATTTTCAATTGTGTCAGT 251559
Query 18269 GGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| || |||| | || |||| || || |||||||||||||| || |||||
Sbjct 251560 GGGTTCTACCTCAAGCGAAATATTTTTACCTGTTAATGTTTTTACAAATATCTGCAT 251616
Score = 86.0 bits (94), Expect = 5e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167
|||| ||| || | ||| | ||| |||||||| || || |||||||| | || ||| ||
Sbjct 251171 AGTCGAAGCACTAAGTGTAATGTGGATTCTTTCTGGATATTGTAGTCTGACAAAGTTCTA 251230
Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227
||||||| || ||||| || ||| | || | || ||||| || || | |||||
Sbjct 251231 GAATCTTCTAACTGTTTTCCAGCAAAAATTAATCGCTGTTGGTCTGGCGGAATCCCTTCT 251290
Query 18228 TTATCGGCAATTTGTTGCTTGAC-CTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286
|| || ||||| ||| || || | ||| |||||| ||| ||| ||| | |
Sbjct 251291 TTGTCCTGAATTTTCATCTTTACACTCT-CAATAGTGTCGTTGGGTTCGACTTCCAAAGA 251349
Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| |||| || || || || |||||||||||||| ||
Sbjct 251350 TATATTTTTTCCTGTTAAGGTCTTTACAAAAATTTGTAT 251388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379337888056890
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |