Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 141 9e-29 seq391 102 8e-17 >seq1 Length=3593316 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || ||||||||||| || || || | || || |||||||| || |||||||| | Sbjct 1033027 CCACCACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGAC 1033086 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | |||||||| |||||||||||| |||||| ||||||||||| || || Sbjct 1033087 AATGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGA 1033146 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || |||||| ||| | | ||| | ||||| | || || || Sbjct 1033147 ATACCTTCTTTATCCTGGATTTTAGCTTTCACATTTTCGATAGTGTCCGATGGTTCGACT 1033206 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || ||||| ||||| ||||||||||| ||||||||| Sbjct 1033207 TCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCATA 1033254 Score = 134 bits (148), Expect = 1e-26 Identities = 161/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA- 139608 ||||| || || || | || || |||||||| |||||||||||| || ||| |||| Sbjct 1031612 CGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCGGACAATGT--TCGAC 1031669 Query 139609 -GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 139667 ||||| | ||||| || ||| |||||| ||| |||||||| || || || ||||||| Sbjct 1031670 CATCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTT 1031729 Query 139668 TGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 |||| ||||||| ||| | | ||| | || || | || ||||| || | ||| | Sbjct 1031730 TGTCTTGGATTTTTGCTTTGACATTTTCGATAGTATCCGATGGTTCCACTTCCAAGGTGA 1031789 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || |||||||| ||||||||||| |||||||| Sbjct 1031790 TGGTTTTACCGGTCAATGTTTTTACGAAAATTTGCAT 1031826 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| |||| |||||| || || || | || || || |||||||| ||||||||| | Sbjct 1033255 CCGCCACGTAGACGCAATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCGGAC 1033314 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||||||| |||||| ||||||||||| || || Sbjct 1033315 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGA 1033374 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||||||||| || ||| |||| | |||| | | ||| | ||||| | || || || Sbjct 1033375 ATGCCTTCTTTATC-TTGAATTTTGGCTTTAACATTTTCGATGGTGTCCGATGGTTCGAC 1033433 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || ||||| ||||||||||| |||||||| Sbjct 1033434 TTCCAAAGTGATGGTTTTACCAGTCAATGTTTTTACGAAGATTTGCAT 1033481 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || ||||| ||||| || | |||| || || |||||||||||||| ||||| | Sbjct 1032512 CCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGAC 1032571 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| |||||||| ||||| | |||| ||||||||| || || || Sbjct 1032572 AATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGA 1032631 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| || | | ||| | || || | ||| ||||| Sbjct 1032632 ATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCACT 1032691 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || ||||| ||||| || || || |||||| Sbjct 1032692 TCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCATA 1032739 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| |||||| || || || | || ||||||||||| ||||| ||||| Sbjct 1032284 CCACCACGTAGACGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCGAT 1032343 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| | |||||||| ||| |||||| ||||||||| || || || Sbjct 1032344 AATGTACGACCATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTGGA 1032403 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || ||||| || ||| |||||| || | | ||| | ||| || | || || || Sbjct 1032404 ATTCCCTCTTTATC-CTGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCAAC 1032462 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || ||||| ||||| ||||| ||||||||| Sbjct 1032463 GTCTAATGTGATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCATA 1032511 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| ||||| || || | || || || ||||||||||| |||||| | Sbjct 1032056 CCACCACGGAGACGTAAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGGAC 1032115 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | || || || ||| |||||| ||||||||||| || || Sbjct 1032116 AAAGTTCTTCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGGGA 1032175 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| |||||| ||||| | ||| | || || | ||||| || Sbjct 1032176 ATTCCCTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTATCAGATGGCTCGACT 1032235 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || ||||| | ||||| ||||| ||||||||| Sbjct 1032236 TCCAATGTAATAGTTTTACCGGTAAGAGTTTTGACGAAAATTTGCATA 1032283 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || ||||||||||| || |||||| | || | ||||| | ||||||||| Sbjct 1031858 GTGGATTCTTTTTGAATATTGTAATCGGATAAGGTACGGCCATCTTCCAATTGTTTACCA 1031917 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || | |||| |||||||||||| || || || ||||| || || ||| | || | ||| Sbjct 1031918 GCGAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTATC-TTGAATCTTGGCTTT 1031976 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | ||| | ||| || | ||||| || || | || | ||| || || || | || Sbjct 1031977 TACATTTTCGATTGTATCCGATGGCTCGACTTCCAAAGTGATCGTTTTACCAGTTAGGGT 1032036 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| ||||||||| Sbjct 1032037 CTTGACGAAAATTTGCATA 1032055 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || ||||| || || || | |||| ||||| |||||||||||||| ||||| Sbjct 1032740 CCACCACGTAATCGTAATACGAGATGAAGTGTAGATTCTTTTTGAATGTTGTAATCCGAT 1032799 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| | ||||||||| ||| | |||| |||||||||||| || || Sbjct 1032800 AGGGTGCGACCATCTTCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGATCTGGTGGG 1032859 Query 139658 ATGCCT 139663 |||||| Sbjct 1032860 ATGCCT 1032865 >seq391 Length=841353 Score = 102 bits (112), Expect = 8e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||||| ||||| || || ||||| || ||||| || ||| Sbjct 730826 CCTCCTCTAAGACGAAGCACTAAATGAATTGTGGATTCTTTCTGGATGTTGTAGTCGGAT 730885 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| || || || ||||||||| | || || | ||||||||| || || Sbjct 730886 AAAGTGCGGTTGTCGTCTAGTTGCTTACCAGCAAAAATAAGTCTTTGCTGATCCGGGGGA 730945 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG--TTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| || ||||| ||| | || || | ||||| | || |||| Sbjct 730946 ATTCCTTCTTTGTCTTGGA--TTTTGGTTTTGATGGACTCAATAGTGTCATTTGGTTCCA 731003 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | |||| || || || ||||| ||||| || ||||| Sbjct 731004 CCTCCAGGGTAATGTTCTTCCCTGTTAATGTTTTCACGAAAATCTGCAT 731052 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || ||||| || | || | || || || ||||||||||| ||||| | Sbjct 250934 CCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGAC 250993 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||| || || || || || |||||| | || | || || ||||| || || Sbjct 250994 AATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGGA 251053 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||| ||||| | || || | || ||| | ||||| || Sbjct 251054 ATCCCTTCTTTATC-CTGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTAC 251112 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | | | | || || ||||| |||||||| || ||||||||| Sbjct 251113 TTCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCATA 251161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496055802542400