Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq1 401 6e-107
seq990 93.3 4e-14
>seq1
Length=3593316
Score = 401 bits (444), Expect = 6e-107
Identities = 637/901 (71%), Gaps = 22/901 (2%)
Strand=Plus/Minus
Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625
|| || || || ||||||||||||| ||| | ||||||||| || || | |||||||
Sbjct 930132 GACATGACACCACTTTTTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCT 930073
Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685
|| | |||||| | |||||||||||||||||||||| ||| || | ||| ||||||
Sbjct 930072 TCTAATGATATTTGTTCCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACAA 930013
Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745
||| ||| | | ||| | ||| ||| | | |||||||| | |||||||| | | |
Sbjct 930012 TCTAATTCAACCAATAAACGATCGGCACAATATTCAATATAATCGGACATTAATTTAGCA 929953
Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805
|||||||| || | | ||| || | | || ||| | |||||||| ||| ||| |||
Sbjct 929952 TTCATACCGATCAATGATACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACA 929893
Query 13806 GCCTCTTTTATAATAATTGTAATAATCTCATT----AGAAGGAGGATATTTTAGATGTTT 13861
|| || ||||||||| || ||| || || || ||| ||| | ||| |
Sbjct 929892 GCATC---AATAATAATTTCAACAAT-TCGTTGTGATGATGGACGATTACGAATATGATG 929837
Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921
||| | | ||| |||||||||||||| | || ||||| | ||| | ||| |||||
Sbjct 929836 AAACAAAAGACAGGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGA 929777
Query 13922 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981
||| || | || ||||| | || |||||||||| |||||| ||||| |||||||| ||
Sbjct 929776 AAAGGTAAGACCAGGCATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACC 929717
Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041
|||||| |||||||| ||||| |||||||| || ||||| ||||| |||| | |
Sbjct 929716 GGAAAAAAATATTCCTTCAACAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGA 929657
Query 14042 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttt-tttA-ATAAAATCCATTGTT 14099
| | | |||| | ||||||||| || |||||| | || | || | |||
Sbjct 929656 ATCATCTTGTGTCCAACGTATAGCCCATTTAGCTTTTTTCTCTACACAAGGTAGATTACG 929597
Query 14100 TCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 14159
| |||||||| |||| | | || | || ||| | || | || |||| ||| | |
Sbjct 929596 T--ATAGCATTGAATAGAAAATCTTGTTCATTACGATCCGATACATAGGTATTAATCAAT 929539
Query 14160 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTA 14219
|| ||||||||| || || | ||||| ||||| || ||||| |||||||| || |
Sbjct 929538 AATGAATACATTTCTGAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGT 929479
Query 14220 GCTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14278
||||| | |||||| || ||| ||||| | ||| || |||||||||||||| |||||
Sbjct 929478 GCTTCTGGTATTTGTACATCACGAATAAAA-CGTTCAGCTAAATTTTCATTAACAATACC 929420
Query 14279 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT---GTT 14335
|||||| || |||||||| ||||||| | | ||| | | || | |||||| ||
Sbjct 929419 ATCACTTGCAGCAAAAAAAGCCAATACATGTGAAAT---GAAATGTTTTTCATTCGAATT 929363
Query 14336 GAGTTTTTTCCAATCGGATAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAAC 14394
| ||| ||||||| | | || ||| | ||||||||||| ||||||||||||||
Sbjct 929362 TAATTTATTCCAAT-GTACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATG 929304
Query 14395 TAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAA 14454
|| |||||||||| |||||| ||| || || | |||| || ||||| | ||||
Sbjct 929303 ATGCTTCAGCTTTTTTGTACATTGTCCAAATATCATGATATTGAATTGGAAACAAAACAA 929244
Query 14455 A 14455
|
Sbjct 929243 A 929243
>seq990
Length=1130841
Score = 93.3 bits (102), Expect = 4e-14
Identities = 338/519 (65%), Gaps = 24/519 (5%)
Strand=Plus/Minus
Query 13892 GCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttt 13951
||| || ||||| ||| |||||||| ||| || || || || | || || |||||
Sbjct 1099365 GCCTTCGTCTCTCGAAATCAGTTCGTTACTAAACGTCAAACCAGGAAGCAGACCGCGTTT 1099306
Query 13952 ttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14011
||| | ||| || || || ||| || ||| ||| || |||||||| |||||| ||
Sbjct 1099305 TTTCATCCAGAAAATGGCGCAAAAAGAACCGCTAAACAAAATTCCCTCGACTGCACAGAA 1099246
Query 14012 CGCTATTAATCGTTCTCCAAACGAT-GCTTTTTTGTTCGATATCCATTTTCTAGCCCATT 14070
||||| || ||||| | |||| | || | || ||||| ||| ||||||
Sbjct 1099245 CGCTAGCAAGCGTTC----AGCGATTGAGTTCTCATTATTAATCCACTTTAAAGCCCAAA 1099190
Query 14071 CAGAtttttttttAA----TAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTC 14126
| |||| || || | ||| || |||| ||||| ||| || | || ||
Sbjct 1099189 GCGCTTTTGATTCAACGGCTTTAAT--ATGGTTT--ATAGCTCGAAA-AATTTTTATTTG 1099135
Query 14127 TCTTTAGTACTTGAAATGTATGTA----TCAATAAGTAAGCTATACATTTCAGAGTGTAT 14182
| || ||| | || | || ||||| || || |||||| |||||||||| ||
Sbjct 1099134 TTCTTGCAGATTGGATTGCAAATAACAATCAATCAGCAAACTATACGTTTCAGAGTGGAT 1099075
Query 14183 GTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGA 14242
|||||||| || | |||||| | || || |||| ||| | ||| | || ||
Sbjct 1099074 ATTTTCCATCGCCAACTGAAATGCGTAGAAATCTCTAATTTCAGGGACTTGAAACTC-GA 1099016
Query 14243 GTAAAATCTTTCGGCCAAA-TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301
| |||| || |||| ||||| ||| || || ||||| ||||||||||| ||||
Sbjct 1099015 GGAAAAAACGACGTCCAATGTTTTCTAAAACGATTCCGTCACTTGCTGCAAAAAACGCCA 1098956
Query 14302 ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT--CGGATAAATC 14359
| | |||||| || || || | | || | || ||||||| || | ||
Sbjct 1098955 GCACATATTTAATGAAACTTTTTTCGTTCTCATTCAAATTATTCCAATCACGCAGGTCTC 1098896
Query 14360 CTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14398
| || || ||||| ||| ||| | |||||||||| |||
Sbjct 1098895 CATACAA--ATCTATTTCTTCAGCCGTCCAAAAACAAGC 1098859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479720072494800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |