Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1 401 6e-107 seq990 93.3 4e-14 >seq1 Length=3593316 Score = 401 bits (444), Expect = 6e-107 Identities = 637/901 (71%), Gaps = 22/901 (2%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || || ||||||||||||| ||| | ||||||||| || || | ||||||| Sbjct 930132 GACATGACACCACTTTTTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCT 930073 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 || | |||||| | |||||||||||||||||||||| ||| || | ||| |||||| Sbjct 930072 TCTAATGATATTTGTTCCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACAA 930013 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 ||| ||| | | ||| | ||| ||| | | |||||||| | |||||||| | | | Sbjct 930012 TCTAATTCAACCAATAAACGATCGGCACAATATTCAATATAATCGGACATTAATTTAGCA 929953 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 |||||||| || | | ||| || | | || ||| | |||||||| ||| ||| ||| Sbjct 929952 TTCATACCGATCAATGATACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACA 929893 Query 13806 GCCTCTTTTATAATAATTGTAATAATCTCATT----AGAAGGAGGATATTTTAGATGTTT 13861 || || ||||||||| || ||| || || || ||| ||| | ||| | Sbjct 929892 GCATC---AATAATAATTTCAACAAT-TCGTTGTGATGATGGACGATTACGAATATGATG 929837 Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921 ||| | | ||| |||||||||||||| | || ||||| | ||| | ||| ||||| Sbjct 929836 AAACAAAAGACAGGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGA 929777 Query 13922 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981 ||| || | || ||||| | || |||||||||| |||||| ||||| |||||||| || Sbjct 929776 AAAGGTAAGACCAGGCATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACC 929717 Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041 |||||| |||||||| ||||| |||||||| || ||||| ||||| |||| | | Sbjct 929716 GGAAAAAAATATTCCTTCAACAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGA 929657 Query 14042 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttt-tttA-ATAAAATCCATTGTT 14099 | | | |||| | ||||||||| || |||||| | || | || | ||| Sbjct 929656 ATCATCTTGTGTCCAACGTATAGCCCATTTAGCTTTTTTCTCTACACAAGGTAGATTACG 929597 Query 14100 TCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 14159 | |||||||| |||| | | || | || ||| | || | || |||| ||| | | Sbjct 929596 T--ATAGCATTGAATAGAAAATCTTGTTCATTACGATCCGATACATAGGTATTAATCAAT 929539 Query 14160 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTA 14219 || ||||||||| || || | ||||| ||||| || ||||| |||||||| || | Sbjct 929538 AATGAATACATTTCTGAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGT 929479 Query 14220 GCTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14278 ||||| | |||||| || ||| ||||| | ||| || |||||||||||||| ||||| Sbjct 929478 GCTTCTGGTATTTGTACATCACGAATAAAA-CGTTCAGCTAAATTTTCATTAACAATACC 929420 Query 14279 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT---GTT 14335 |||||| || |||||||| ||||||| | | ||| | | || | |||||| || Sbjct 929419 ATCACTTGCAGCAAAAAAAGCCAATACATGTGAAAT---GAAATGTTTTTCATTCGAATT 929363 Query 14336 GAGTTTTTTCCAATCGGATAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAAC 14394 | ||| ||||||| | | || ||| | ||||||||||| |||||||||||||| Sbjct 929362 TAATTTATTCCAAT-GTACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATG 929304 Query 14395 TAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAA 14454 || |||||||||| |||||| ||| || || | |||| || ||||| | |||| Sbjct 929303 ATGCTTCAGCTTTTTTGTACATTGTCCAAATATCATGATATTGAATTGGAAACAAAACAA 929244 Query 14455 A 14455 | Sbjct 929243 A 929243 >seq990 Length=1130841 Score = 93.3 bits (102), Expect = 4e-14 Identities = 338/519 (65%), Gaps = 24/519 (5%) Strand=Plus/Minus Query 13892 GCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttt 13951 ||| || ||||| ||| |||||||| ||| || || || || | || || ||||| Sbjct 1099365 GCCTTCGTCTCTCGAAATCAGTTCGTTACTAAACGTCAAACCAGGAAGCAGACCGCGTTT 1099306 Query 13952 ttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14011 ||| | ||| || || || ||| || ||| ||| || |||||||| |||||| || Sbjct 1099305 TTTCATCCAGAAAATGGCGCAAAAAGAACCGCTAAACAAAATTCCCTCGACTGCACAGAA 1099246 Query 14012 CGCTATTAATCGTTCTCCAAACGAT-GCTTTTTTGTTCGATATCCATTTTCTAGCCCATT 14070 ||||| || ||||| | |||| | || | || ||||| ||| |||||| Sbjct 1099245 CGCTAGCAAGCGTTC----AGCGATTGAGTTCTCATTATTAATCCACTTTAAAGCCCAAA 1099190 Query 14071 CAGAtttttttttAA----TAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTC 14126 | |||| || || | ||| || |||| ||||| ||| || | || || Sbjct 1099189 GCGCTTTTGATTCAACGGCTTTAAT--ATGGTTT--ATAGCTCGAAA-AATTTTTATTTG 1099135 Query 14127 TCTTTAGTACTTGAAATGTATGTA----TCAATAAGTAAGCTATACATTTCAGAGTGTAT 14182 | || ||| | || | || ||||| || || |||||| |||||||||| || Sbjct 1099134 TTCTTGCAGATTGGATTGCAAATAACAATCAATCAGCAAACTATACGTTTCAGAGTGGAT 1099075 Query 14183 GTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGA 14242 |||||||| || | |||||| | || || |||| ||| | ||| | || || Sbjct 1099074 ATTTTCCATCGCCAACTGAAATGCGTAGAAATCTCTAATTTCAGGGACTTGAAACTC-GA 1099016 Query 14243 GTAAAATCTTTCGGCCAAA-TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301 | |||| || |||| ||||| ||| || || ||||| ||||||||||| |||| Sbjct 1099015 GGAAAAAACGACGTCCAATGTTTTCTAAAACGATTCCGTCACTTGCTGCAAAAAACGCCA 1098956 Query 14302 ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT--CGGATAAATC 14359 | | |||||| || || || | | || | || ||||||| || | || Sbjct 1098955 GCACATATTTAATGAAACTTTTTTCGTTCTCATTCAAATTATTCCAATCACGCAGGTCTC 1098896 Query 14360 CTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14398 | || || ||||| ||| ||| | |||||||||| ||| Sbjct 1098895 CATACAA--ATCTATTTCTTCAGCCGTCCAAAAACAAGC 1098859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479720072494800