Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1 408 4e-109 seq990 86.0 6e-12 >seq1 Length=3593316 Score = 408 bits (452), Expect = 4e-109 Identities = 635/898 (71%), Gaps = 16/898 (2%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || || ||||||||||||| ||| | |||||||||||| || | ||||||| Sbjct 930132 GACATGACACCACTTTTTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCT 930073 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 || | |||||| | |||||||||||| ||||||||||||| || | ||| |||||| Sbjct 930072 TCTAATGATATTTGTTCCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACAA 930013 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 ||| ||| | ||||| | ||| ||| | | |||||||| | |||||||| | | | Sbjct 930012 TCTAATTCAACCAATAAACGATCGGCACAATATTCAATATAATCGGACATTAATTTAGCA 929953 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 |||||||| || | | ||| || | | || || | |||||||| ||| ||| ||| Sbjct 929952 TTCATACCGATCAATGATACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACA 929893 Query 13594 GCCTCGTTTATAATAATCTTAATAAT--GTCATTA-GAAGGAGGATATTTTAGATGTTTA 13650 || || |||||||| | || ||| || | | || ||| ||| | ||| | | Sbjct 929892 GCATC---AATAATAATTTCAACAATTCGTTGTGATGATGGACGATTACGAATATGATGA 929836 Query 13651 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13710 || | | ||| |||||||||||||| | || ||||| | ||| | ||| |||||| Sbjct 929835 AACAAAAGACAGGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAA 929776 Query 13711 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 13770 || || | || ||||| | || |||||||||| |||||| ||||| || ||||| ||| Sbjct 929775 AAGGTAAGACCAGGCATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCG 929716 Query 13771 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTT 13830 ||||| |||||||| ||||| |||||||| || |||| ||||| |||| | | Sbjct 929715 GAAAAAAATATTCCTTCAACAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGAA 929656 Query 13831 TTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCG 13890 | | | | |||| | ||||||||| || |||||| | | | || | || || Sbjct 929655 TCATCTTGTGTCCAACGTATAGCCCATTTAGCTTTTTTCTCTACACAAGGTA-GATTACG 929597 Query 13891 -ATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAA 13949 || |||||||||| | || | || ||| | || | || |||| ||| | ||| Sbjct 929596 TATAGCATTGAATAGAAAATCTTGTTCATTACGATCCGATACATAGGTATTAATCAATAA 929537 Query 13950 GCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGC 14009 ||||||||| || || | ||||| ||||| || ||||| ||||||||||| | || Sbjct 929536 TGAATACATTTCTGAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTGC 929477 Query 14010 TTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCAT 14068 ||||| |||||| || ||| ||||| | ||| || || ||||||||||||||||||| Sbjct 929476 TTCTGGTATTTGTACATCACGAATAAAA-CGTTCAGCTAAATTTTCATTAACAATACCAT 929418 Query 14069 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT---GTTGA 14125 |||| || |||||||| ||||||| | | ||| | | || | |||||| || | Sbjct 929417 CACTTGCAGCAAAAAAAGCCAATACATGTGAAAT---GAAATGTTTTTCATTCGAATTTA 929361 Query 14126 GTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14185 ||| ||||||| | | ||| | ||||||||||| |||||||||||||| | Sbjct 929360 ATTTATTCCAATGTACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATG 929301 Query 14186 CGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 | |||||||||| |||||| ||| || || | |||| || ||||| | ||||| Sbjct 929300 CTTCAGCTTTTTTGTACATTGTCCAAATATCATGATATTGAATTGGAAACAAAACAAA 929243 >seq990 Length=1130841 Score = 86.0 bits (94), Expect = 6e-12 Identities = 334/517 (65%), Gaps = 20/517 (4%) Strand=Plus/Minus Query 13680 GCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttt 13739 ||| || ||||| ||| |||||||| ||| || || || || | || || ||||| Sbjct 1099365 GCCTTCGTCTCTCGAAATCAGTTCGTTACTAAACGTCAAACCAGGAAGCAGACCGCGTTT 1099306 Query 13740 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799 ||| | ||| || || || || || ||| ||| || |||||||| |||||| || Sbjct 1099305 TTTCATCCAGAAAATGGCGCAAAAAGAACCGCTAAACAAAATTCCCTCGACTGCACAGAA 1099246 Query 13800 CGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATA-TCCATTTTCTAGCCCATT 13858 ||||| | ||||| | |||| || | || || |||| ||| |||||| Sbjct 1099245 CGCTAGCAAGCGTTC----AGCGATTGAGTTCTCATTATTAATCCACTTTAAAGCCCAAA 1099190 Query 13859 CAGAtttttttttAA----TAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTC 13914 | |||| || || | ||| || |||| || || | ||| || | || || Sbjct 1099189 GCGCTTTTGATTCAACGGCTTTAAT--ATGGTTT--ATAGC-TCGAAAAATTTTTATTTG 1099135 Query 13915 TCTTTAGTACTTGAAATGTATGTA----TCAATAAGTAAGCTATACATTTCAGAGTGTAT 13970 | || ||| | || | || ||||| || || |||||| |||||||||| || Sbjct 1099134 TTCTTGCAGATTGGATTGCAAATAACAATCAATCAGCAAACTATACGTTTCAGAGTGGAT 1099075 Query 13971 GTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGA 14030 ||||| || || | |||||| | || ||| |||| ||| | ||| | ||| || Sbjct 1099074 ATTTTCCATCGCCAACTGAAATGCGTAGAAATCTCTAATTTCAGGGACTTGAAACTC-GA 1099016 Query 14031 GTAAAATCTTTCTGCCAA-GTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA 14089 | |||| | |||| |||||| ||| || || ||||| ||||||||||| |||| Sbjct 1099015 GGAAAAAACGACGTCCAATGTTTTCTAAAACGATTCCGTCACTTGCTGCAAAAAACGCCA 1098956 Query 14090 ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCT 14149 | | |||||| || || || | | || | || |||||||| | || Sbjct 1098955 GCACATATTTAATGAAACTTTTTTCGTTCTCATTCAAATTATTCCAATCACGCAGGTCTC 1098896 Query 14150 TAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14186 | | | ||||| ||| ||| | |||||||||| ||| Sbjct 1098895 CATACAAATCTATTTCTTCAGCCGTCCAAAAACAAGC 1098859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478580891320080