Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq1 408 4e-109
seq990 86.0 6e-12
>seq1
Length=3593316
Score = 408 bits (452), Expect = 4e-109
Identities = 635/898 (71%), Gaps = 16/898 (2%)
Strand=Plus/Minus
Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413
|| || || || ||||||||||||| ||| | |||||||||||| || | |||||||
Sbjct 930132 GACATGACACCACTTTTTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCT 930073
Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473
|| | |||||| | |||||||||||| ||||||||||||| || | ||| ||||||
Sbjct 930072 TCTAATGATATTTGTTCCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACAA 930013
Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533
||| ||| | ||||| | ||| ||| | | |||||||| | |||||||| | | |
Sbjct 930012 TCTAATTCAACCAATAAACGATCGGCACAATATTCAATATAATCGGACATTAATTTAGCA 929953
Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593
|||||||| || | | ||| || | | || || | |||||||| ||| ||| |||
Sbjct 929952 TTCATACCGATCAATGATACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACA 929893
Query 13594 GCCTCGTTTATAATAATCTTAATAAT--GTCATTA-GAAGGAGGATATTTTAGATGTTTA 13650
|| || |||||||| | || ||| || | | || ||| ||| | ||| | |
Sbjct 929892 GCATC---AATAATAATTTCAACAATTCGTTGTGATGATGGACGATTACGAATATGATGA 929836
Query 13651 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13710
|| | | ||| |||||||||||||| | || ||||| | ||| | ||| ||||||
Sbjct 929835 AACAAAAGACAGGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAA 929776
Query 13711 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 13770
|| || | || ||||| | || |||||||||| |||||| ||||| || ||||| |||
Sbjct 929775 AAGGTAAGACCAGGCATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCG 929716
Query 13771 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTT 13830
||||| |||||||| ||||| |||||||| || |||| ||||| |||| | |
Sbjct 929715 GAAAAAAATATTCCTTCAACAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGAA 929656
Query 13831 TTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCG 13890
| | | | |||| | ||||||||| || |||||| | | | || | || ||
Sbjct 929655 TCATCTTGTGTCCAACGTATAGCCCATTTAGCTTTTTTCTCTACACAAGGTA-GATTACG 929597
Query 13891 -ATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAA 13949
|| |||||||||| | || | || ||| | || | || |||| ||| | |||
Sbjct 929596 TATAGCATTGAATAGAAAATCTTGTTCATTACGATCCGATACATAGGTATTAATCAATAA 929537
Query 13950 GCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGC 14009
||||||||| || || | ||||| ||||| || ||||| ||||||||||| | ||
Sbjct 929536 TGAATACATTTCTGAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTGC 929477
Query 14010 TTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCAT 14068
||||| |||||| || ||| ||||| | ||| || || |||||||||||||||||||
Sbjct 929476 TTCTGGTATTTGTACATCACGAATAAAA-CGTTCAGCTAAATTTTCATTAACAATACCAT 929418
Query 14069 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT---GTTGA 14125
|||| || |||||||| ||||||| | | ||| | | || | |||||| || |
Sbjct 929417 CACTTGCAGCAAAAAAAGCCAATACATGTGAAAT---GAAATGTTTTTCATTCGAATTTA 929361
Query 14126 GTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14185
||| ||||||| | | ||| | ||||||||||| |||||||||||||| |
Sbjct 929360 ATTTATTCCAATGTACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATG 929301
Query 14186 CGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243
| |||||||||| |||||| ||| || || | |||| || ||||| | |||||
Sbjct 929300 CTTCAGCTTTTTTGTACATTGTCCAAATATCATGATATTGAATTGGAAACAAAACAAA 929243
>seq990
Length=1130841
Score = 86.0 bits (94), Expect = 6e-12
Identities = 334/517 (65%), Gaps = 20/517 (4%)
Strand=Plus/Minus
Query 13680 GCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttt 13739
||| || ||||| ||| |||||||| ||| || || || || | || || |||||
Sbjct 1099365 GCCTTCGTCTCTCGAAATCAGTTCGTTACTAAACGTCAAACCAGGAAGCAGACCGCGTTT 1099306
Query 13740 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799
||| | ||| || || || || || ||| ||| || |||||||| |||||| ||
Sbjct 1099305 TTTCATCCAGAAAATGGCGCAAAAAGAACCGCTAAACAAAATTCCCTCGACTGCACAGAA 1099246
Query 13800 CGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATA-TCCATTTTCTAGCCCATT 13858
||||| | ||||| | |||| || | || || |||| ||| ||||||
Sbjct 1099245 CGCTAGCAAGCGTTC----AGCGATTGAGTTCTCATTATTAATCCACTTTAAAGCCCAAA 1099190
Query 13859 CAGAtttttttttAA----TAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTC 13914
| |||| || || | ||| || |||| || || | ||| || | || ||
Sbjct 1099189 GCGCTTTTGATTCAACGGCTTTAAT--ATGGTTT--ATAGC-TCGAAAAATTTTTATTTG 1099135
Query 13915 TCTTTAGTACTTGAAATGTATGTA----TCAATAAGTAAGCTATACATTTCAGAGTGTAT 13970
| || ||| | || | || ||||| || || |||||| |||||||||| ||
Sbjct 1099134 TTCTTGCAGATTGGATTGCAAATAACAATCAATCAGCAAACTATACGTTTCAGAGTGGAT 1099075
Query 13971 GTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGA 14030
||||| || || | |||||| | || ||| |||| ||| | ||| | ||| ||
Sbjct 1099074 ATTTTCCATCGCCAACTGAAATGCGTAGAAATCTCTAATTTCAGGGACTTGAAACTC-GA 1099016
Query 14031 GTAAAATCTTTCTGCCAA-GTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA 14089
| |||| | |||| |||||| ||| || || ||||| ||||||||||| ||||
Sbjct 1099015 GGAAAAAACGACGTCCAATGTTTTCTAAAACGATTCCGTCACTTGCTGCAAAAAACGCCA 1098956
Query 14090 ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCT 14149
| | |||||| || || || | | || | || |||||||| | ||
Sbjct 1098955 GCACATATTTAATGAAACTTTTTTCGTTCTCATTCAAATTATTCCAATCACGCAGGTCTC 1098896
Query 14150 TAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14186
| | | ||||| ||| ||| | |||||||||| |||
Sbjct 1098895 CATACAAATCTATTTCTTCAGCCGTCCAAAAACAAGC 1098859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478580891320080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |