Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1 168 7e-37 seq391 120 3e-22 >seq1 Length=3593316 Score = 168 bits (186), Expect = 7e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || ||||||||||| || ||||| | || |||||||||||||| || ||||| | Sbjct 1033027 CCACCACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGAC 1033086 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||||||||||||||||||| |||||| ||||||||||| || || Sbjct 1033087 AATGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGA 1033146 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||| ||| | | ||| | ||||||| ||||| ||| Sbjct 1033147 ATACCTTCTTTATCCTGGATTTTAGCTTTCACATTTTCGATAGTGTCCGATGGTTCGACT 1033206 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || ||||| ||||| ||||||||||| ||||||||| Sbjct 1033207 TCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCATA 1033254 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| |||||| || ||||| | ||| ||||| ||||| || || |||||| | Sbjct 1033255 CCGCCACGTAGACGCAATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCGGAC 1033314 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | ||||||||||||| |||||| ||||||||||| || || Sbjct 1033315 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGA 1033374 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||||||||| || |||||| ||| | | ||| | ||||||| ||||| ||| Sbjct 1033375 ATGCCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCGATGGTGTCCGATGGTTCGACT 1033434 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || ||||||||||||||||| |||||||| Sbjct 1033435 TCCAAAGTGATGGTTTTACCAGTCAATGTTTTTACGAAGATTTGCAT 1033481 Score = 152 bits (168), Expect = 5e-32 Identities = 165/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA- 143028 ||||| || ||||| | ||| ||||||||||| ||||| |||||| || ||| |||| Sbjct 1031612 CGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCGGACAATGT--TCGAC 1031669 Query 143029 -GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 143087 ||||| | |||||| || ||| |||||| ||| |||||||| || || || ||||||| Sbjct 1031670 CATCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTT 1031729 Query 143088 TGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCA 143147 |||| |||||| ||| | | ||| | || |||| ||||| ||||| | || | Sbjct 1031730 TGTCTTGGATTTTTGCTTTGACATTTTCGATAGTATCCGATGGTTCCACTTCCAAGGTGA 1031789 Query 143148 CCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || |||||||||||||||||||| |||||||| Sbjct 1031790 TGGTTTTACCGGTCAATGTTTTTACGAAAATTTGCAT 1031826 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || ||||| ||||| || | ||||| ||| ||||||||||| ||||||||||| | Sbjct 1032512 CCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGAC 1032571 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| || ||||| ||||| | |||| ||||||||| || || || Sbjct 1032572 AATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGA 1032631 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| || | | ||| | || |||| |||||| ||| Sbjct 1032632 ATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCACT 1032691 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || || || ||||| ||||| || || || |||||| Sbjct 1032692 TCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCATA 1032739 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| ||||| ||||| | ||| ||||| ||||| |||||||||||| | Sbjct 1032056 CCACCACGGAGACGTAAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGGAC 1032115 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||| || || ||| |||||| ||||||||||| || || Sbjct 1032116 AAAGTTCTTCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGGGA 1032175 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||||| ||||| | ||| | ||| || | || || ||| Sbjct 1032176 ATTCCCTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTATCAGATGGCTCGACT 1032235 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || || ||||| | ||||| ||||| ||||||||| Sbjct 1032236 TCCAATGTAATAGTTTTACCGGTAAGAGTTTTGACGAAAATTTGCATA 1032283 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| |||||| || ||||| | || || |||||||| ||||||||||| Sbjct 1032284 CCACCACGTAGACGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCGAT 1032343 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| | ||||||||| ||| |||||| ||||||||| || || || Sbjct 1032344 AATGTACGACCATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTGGA 1032403 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || ||||| || ||||||| || | | ||| | || || | ||||| || Sbjct 1032404 ATTCCCTCTTTATCCTGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCAACG 1032463 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || || || ||||||||||| ||||| ||||||||| Sbjct 1032464 TCTAATGTGATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCATA 1032511 Score = 120 bits (132), Expect = 3e-22 Identities = 414/640 (65%), Gaps = 12/640 (2%) Strand=Plus/Plus Query 50226 TTTTTACACATTTCAAGCGGCCATGGAAAATGTTCACACACAAATGTACGGAACGTTAAT 50285 |||||| ||||||| || || ||||||||||| || ||||||| | || || Sbjct 929485 TTTTTATGGATTTCAAATTGCTATCGAAAATGTTCATTCAGAAATGTATTCATTATTGAT 929544 Query 50286 TATTACATTGATTCCGGACAAAAAGCAACAAGACTTAATACTCAACGCTTTCGATAATAT 50345 || ||| | | |||| || ||||||| || || |||| ||| | |||| | Sbjct 929545 TAATACCTATGTATCGGATCGTAATGAACAAGATTTTCTATTCAATGCTATACGTAATCT 929604 Query 50346 TTCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaaCTTAC 50405 | ||||| ||||| | | ||||| | ||||| || | | |||| Sbjct 929605 ACCTTGTGTAGAGAAAAAAGCTAAATGGGCTATACGTTGGACACAAGATGATTCGGTTAC 929664 Query 50406 TTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTT 50465 || |||||||||||| | || ||||| |||||||| | |||||||||||| || Sbjct 929665 ATTTGCCGAACGTTTAATTGCATTTGCTGCTGTTGAAGGAATATTTTTTTCCGGTTCATT 929724 Query 50466 TGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGA 50525 |||||| || |||| | |||| ||| ||||||| || || || ||| || || Sbjct 929725 TGCAGCAATTTTTTGGCTAAAAAAACGTGGCCTAATGCCTGGTCTTACCTTTTCAAATGA 929784 Query 50526 GTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGT-TTGTACTACAATACGC 50584 |||||||| || || |||||| | || || ||||| ||| || | | || | Sbjct 929785 ATTGATTTCACGTGATGAAGGATTACATTGTGATTTTGCCTGTCTTTTGTTTCATCATAT 929844 Query 50585 GCGTAAATGAAAAATTATCATACGAAACAATTTTGGACATGTTCAAAGAAGCCGTCGACA 50644 ||||| | ||||| || |||| | || || | | || || || | | Sbjct 929845 TCGTAATCG----TCCATCATCACAACGAATTGTTGAAATTATTATTGATGCTGTTAATA 929900 Query 50645 TCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACA 50704 | ||| |||| ||| | || || || ||||| || ||||| | || ||||| || | Sbjct 929901 TTGAACAAGAATTTCTTACCGATGCATTACCAGTATCATTGATCGGTATGAATGCTAAAT 929960 Query 50705 TGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTT-GTTGCAGCTG--GGACAAC 50761 | |||| ||| || ||||| | | ||| || | || || |||| | | | || Sbjct 929961 TAATGTCCGATTATATTGAATATTGTGCCGATCGTTTATTGGTTGAATTAGATTGTGAA- 930019 Query 50762 CGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCA 50821 ||| | ||||| || || || ||| |||||| | | ||||| || || || | Sbjct 930020 --AAACATTATAAAACAACAAATCCATTTGATTTTATGGAACAAATATCATTAGAAGGTA 930077 Query 50822 AAACAAACTTTTTCGAAAGACGTGTAGGCGAATA-CAAAA 50860 || |||| ||||| |||| |||||| | |||||| ||||| Sbjct 930078 AATCAAATTTTTTTGAAAAACGTGTTGCCGAATATCAAAA 930117 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||| | || ||||||||||| || ||||||||| Sbjct 1031828 CCACCACGGAGACGAAGCACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAATCGGAT 1031887 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | |||||||||||| | |||| |||||||||||| || || Sbjct 1031888 AAGGTACGGCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTGGTGGA 1031947 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| || ||||| | ||| | || |||| || || ||| Sbjct 1031948 ATACCTTCCTTATCTTGAATCTTGGCTTTTACATTTTCGATTGTATCCGATGGCTCGACT 1032007 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||| || || || | || || ||||| ||||||||| Sbjct 1032008 TCCAAAGTGATCGTTTTACCAGTTAGGGTCTTGACGAAAATTTGCATA 1032055 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || ||||| || || || | ||||| ||||||||||||||| ||||||||||| Sbjct 1032740 CCACCACGTAATCGTAATACGAGATGAAGTGTAGATTCTTTTTGAATGTTGTAATCCGAT 1032799 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | |||||||| ||| | |||| |||||||||||| || || Sbjct 1032800 AGGGTGCGACCATCTTCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGATCTGGTGGG 1032859 Query 143078 ATGCCT 143083 |||||| Sbjct 1032860 ATGCCT 1032865 >seq391 Length=841353 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | |||||||||||||| |||||||| || |||||||| ||| Sbjct 730826 CCTCCTCTAAGACGAAGCACTAAATGAATTGTGGATTCTTTCTGGATGTTGTAGTCGGAT 730885 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| || ||||| ||||||||| | || || | ||||||||| || || Sbjct 730886 AAAGTGCGGTTGTCGTCTAGTTGCTTACCAGCAAAAATAAGTCTTTGCTGATCCGGGGGA 730945 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG--TTCCACCGTGTCCGTGGGTTCTA 143135 || ||||||||||| | ||||| ||| | || || | ||||| | ||||| | Sbjct 730946 ATTCCTTCTTTGTC--TTGGATTTTGGTTTTGATGGACTCAATAGTGTCATTTGGTTCCA 731003 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | || | |||| || || |||||||| ||||| || ||||| Sbjct 731004 CCTCCAGGGTAATGTTCTTCCCTGTTAATGTTTTCACGAAAATCTGCAT 731052 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || ||||| || | ||| | || ||||| ||||| ||||||||||| | Sbjct 250934 CCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGAC 250993 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||| || || ||||| || |||||| | || | || || ||||| || || Sbjct 250994 AATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGGA 251053 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTA-GCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || |||||||| || |||||| ||| | ||| ||| | || || | || ||||| Sbjct 251054 ATCCCTTCTTTATCCTGAATTTTCGTTTTCACGCT-TTCAATGGTATCGTTTGGCTCTAC 251112 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | || | | || || ||||| |||||||| || ||||||||| Sbjct 251113 TTCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCATA 251161 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | || | ||||| || | || |||||||| || || ||||| || | Sbjct 251390 CCTCCTCTAAGCCGTAGCACTAAGTGTAACGTCGATTCTTTCTGGATATTGTAGTCTGAC 251449 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || ||||| | |||||| |||||| | || | ||||| ||||| || || Sbjct 251450 AAAGTTCTAGAATCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGTTGATCAGGCGGA 251509 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || |||||| ||| | | ||| | ||||| ||||||||||| Sbjct 251510 ATTCCTTCCTTATCCTGAATTTTCGTTTTCACATTTTCAATTGTGTCAGTGGGTTCTACC 251569 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| | | | || || || ||||||||||| ||||| |||||| || Sbjct 251570 TCAAGCGAAATATTTTTACCTGTTAATGTTTTTACAAATATCTGCATACCT 251620 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 ||||| || | ||| |||||||| || || ||||| || || || || || ||||| Sbjct 251180 ACTAAGTGTAATGTGGATTCTTTCTGGATATTGTAGTCTGACAAAGTTCTAGAATCTTCT 251239 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||||| |||||| | || | || || || || || || || ||||||||||| | Sbjct 251240 AACTGTTTTCCAGCAAAAATTAATCGCTGTTGGTCTGGCGGAATCCCTTCTTTGTCCTGA 251299 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| |||| || | ||||| ||||||| ||||| | || | | || Sbjct 251300 ATTTTCATCTTTACACTCTCAATAGTGTCGTTGGGTTCGACTTCCAAAGATATATTTTTT 251359 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || || || || ||||| || ||||| ||| || Sbjct 251360 CCTGTTAAGGTCTTTACAAAAATTTGTATACCT 251392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507006021587040