Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq335 123 4e-23 seq1101 98.7 1e-15 >seq335 Length=939964 Score = 123 bits (136), Expect = 4e-23 Identities = 339/517 (66%), Gaps = 2/517 (0%) Strand=Plus/Plus Query 96831 GTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGGCAATAAA 96890 ||||| ||||| | ||| ||| || | | || ||||| ||||||||| || Sbjct 179026 GTGCCGATGCTGCGCGTGTTCAACGCGACCGCGCGCTACGTCGACCAGGGCGGCGGCAAG 179085 Query 96891 CGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATC 96950 || ||||| | || ||||| |||| || |||||||| ||| | || || || ||| Sbjct 179086 CGCAAAGGCGGCTTCGCGATCTACCTGGAGCCGTGGCACGCAGACATCTTCGAGTTCATC 179145 Query 96951 GAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTC 97010 ||| |||| ||| ||| |||||| || | ||||| | || | || Sbjct 179146 GAGCTGCGGCGCAACCACGGCAACGAAGAGTTGCGCACGCGGGACCTCTTCCTGGGGCTG 179205 Query 97011 TGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGC 97070 | | || ||||||||| ||||| |||| | ||| ||||| || ||||| Sbjct 179206 TACATCAACGACTTGTTCATGCGCCGCGTGGACGAAGACGGCGTGTGGAGTCTGATGTGT 179265 Query 97071 CCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACG 97130 |||| ||| || || ||| ||| |||||||| ||||| || || ||||||| Sbjct 179266 CCCGCGCAGTCGCCGGGCTTGTTCGAAGTCTGGGGCGCGGAGTTCGACGCGCTGTACACG 179325 Query 97131 GCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCC 97190 ||||||| ||| || | |||| | | || | || || | || |||| || | Sbjct 179326 CGCTACGAGGCCGAGCAGCGCTTCGTGCGGCAGGTGAAGGCGCGCGCGCTCTGGACGGTC 179385 Query 97191 ATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTG-AA 97249 || |||| | ||| | ||||| || | ||||||| | | |||||||| | ||| || Sbjct 179386 ATTGTGAACACGCAGATCGAGACGGGCAATCCGTACTTGGTGTACAAGGACGC-GTGCAA 179444 Query 97250 TCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAAT 97309 ||||| ||||| || || | ||||||||| || ||| || |||||||||||| | Sbjct 179445 CCGCAAGTCGAACCAGCGGAACCTCGGCACCATCCAGTCCTCGAACCTGTGCACGGAAGT 179504 Query 97310 TGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 || ||||| | || | || |||| || || ||| Sbjct 179505 GGTGCAGTACACGTCGCGCGAGGAGATCGCGGTGTGC 179541 >seq1101 Length=1082900 Score = 98.7 bits (108), Expect = 1e-15 Identities = 240/362 (66%), Gaps = 4/362 (1%) Strand=Plus/Plus Query 96974 TGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAA 97033 |||||| || || || |||| ||||| || ||| | ||| | || |||||||| ||||| Sbjct 175391 TGAAGAAGCTCGTGCTCGGGATTTGTTCTACGCATTGTGGATTCCTGATTTGTTTATGAA 175450 Query 97034 GCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTC 97093 | || || | | ||||||||||||| ||||| || || ||||||||||| Sbjct 175451 AAGAGTAGACCAAGACAGCTACTGGAGCCTCATGTGTCCGCACCAATCACCCGGTCTACA 175510 Query 97094 CGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACG--GCCTACGAGCAAGAGGGCCGA 97151 ||| ||||| || |||| ||| || | ||| | || || |||| || ||| Sbjct 175511 CGAGGTTTGGGGGAAAAAGTTCGAG--AAACTCTACGAATCATATGAAAAAGAAGGTCGA 175568 Query 97152 TACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAG 97211 ||| | | | | || | || || ||||| |||| ||| || | |||| | || Sbjct 175569 TACATCAAGCAAATCAAAGCTCGTGAACTTTGGATGGCAATTTTAGTCACTCAAATGGAA 175628 Query 97212 ACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCAC 97271 ||||||| || || || | | || ||| ||| ||||| || ||||| | || Sbjct 175629 ACTGGAAACCCCTATATGGTTTTTAAAGATGCCGCAAATCGAAAGTCTAACCAGCAAAAC 175688 Query 97272 TTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGAC 97331 | || |||||| || ||||||| | || || ||| || | | ||| | ||||| || Sbjct 175689 CTCGGAACCATCCAGTCCTCCAATTTATGTACTGAAGTTATTCAATACACTTCTCCTGAT 175748 Query 97332 GA 97333 || Sbjct 175749 GA 175750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741046953996720