Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq335 123 4e-23
seq1101 98.7 1e-15
>seq335
Length=939964
Score = 123 bits (136), Expect = 4e-23
Identities = 339/517 (66%), Gaps = 2/517 (0%)
Strand=Plus/Plus
Query 96831 GTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGGCAATAAA 96890
||||| ||||| | ||| ||| || | | || ||||| ||||||||| ||
Sbjct 179026 GTGCCGATGCTGCGCGTGTTCAACGCGACCGCGCGCTACGTCGACCAGGGCGGCGGCAAG 179085
Query 96891 CGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATC 96950
|| ||||| | || ||||| |||| || |||||||| ||| | || || || |||
Sbjct 179086 CGCAAAGGCGGCTTCGCGATCTACCTGGAGCCGTGGCACGCAGACATCTTCGAGTTCATC 179145
Query 96951 GAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTC 97010
||| |||| ||| ||| |||||| || | ||||| | || | ||
Sbjct 179146 GAGCTGCGGCGCAACCACGGCAACGAAGAGTTGCGCACGCGGGACCTCTTCCTGGGGCTG 179205
Query 97011 TGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGC 97070
| | || ||||||||| ||||| |||| | ||| ||||| || |||||
Sbjct 179206 TACATCAACGACTTGTTCATGCGCCGCGTGGACGAAGACGGCGTGTGGAGTCTGATGTGT 179265
Query 97071 CCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACG 97130
|||| ||| || || ||| ||| |||||||| ||||| || || |||||||
Sbjct 179266 CCCGCGCAGTCGCCGGGCTTGTTCGAAGTCTGGGGCGCGGAGTTCGACGCGCTGTACACG 179325
Query 97131 GCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCC 97190
||||||| ||| || | |||| | | || | || || | || |||| || |
Sbjct 179326 CGCTACGAGGCCGAGCAGCGCTTCGTGCGGCAGGTGAAGGCGCGCGCGCTCTGGACGGTC 179385
Query 97191 ATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTG-AA 97249
|| |||| | ||| | ||||| || | ||||||| | | |||||||| | ||| ||
Sbjct 179386 ATTGTGAACACGCAGATCGAGACGGGCAATCCGTACTTGGTGTACAAGGACGC-GTGCAA 179444
Query 97250 TCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAAT 97309
||||| ||||| || || | ||||||||| || ||| || |||||||||||| |
Sbjct 179445 CCGCAAGTCGAACCAGCGGAACCTCGGCACCATCCAGTCCTCGAACCTGTGCACGGAAGT 179504
Query 97310 TGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346
|| ||||| | || | || |||| || || |||
Sbjct 179505 GGTGCAGTACACGTCGCGCGAGGAGATCGCGGTGTGC 179541
>seq1101
Length=1082900
Score = 98.7 bits (108), Expect = 1e-15
Identities = 240/362 (66%), Gaps = 4/362 (1%)
Strand=Plus/Plus
Query 96974 TGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAA 97033
|||||| || || || |||| ||||| || ||| | ||| | || |||||||| |||||
Sbjct 175391 TGAAGAAGCTCGTGCTCGGGATTTGTTCTACGCATTGTGGATTCCTGATTTGTTTATGAA 175450
Query 97034 GCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTC 97093
| || || | | ||||||||||||| ||||| || || |||||||||||
Sbjct 175451 AAGAGTAGACCAAGACAGCTACTGGAGCCTCATGTGTCCGCACCAATCACCCGGTCTACA 175510
Query 97094 CGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACG--GCCTACGAGCAAGAGGGCCGA 97151
||| ||||| || |||| ||| || | ||| | || || |||| || |||
Sbjct 175511 CGAGGTTTGGGGGAAAAAGTTCGAG--AAACTCTACGAATCATATGAAAAAGAAGGTCGA 175568
Query 97152 TACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAG 97211
||| | | | | || | || || ||||| |||| ||| || | |||| | ||
Sbjct 175569 TACATCAAGCAAATCAAAGCTCGTGAACTTTGGATGGCAATTTTAGTCACTCAAATGGAA 175628
Query 97212 ACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCAC 97271
||||||| || || || | | || ||| ||| ||||| || ||||| | ||
Sbjct 175629 ACTGGAAACCCCTATATGGTTTTTAAAGATGCCGCAAATCGAAAGTCTAACCAGCAAAAC 175688
Query 97272 TTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGAC 97331
| || |||||| || ||||||| | || || ||| || | | ||| | ||||| ||
Sbjct 175689 CTCGGAACCATCCAGTCCTCCAATTTATGTACTGAAGTTATTCAATACACTTCTCCTGAT 175748
Query 97332 GA 97333
||
Sbjct 175749 GA 175750
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741046953996720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |