Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1 161 7e-35 seq391 118 8e-22 >seq1 Length=3593316 Score = 161 bits (178), Expect = 7e-35 Identities = 175/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | |||| || || | |||||| || || |||||||| ||||||||||| Sbjct 1032512 CCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCG-- 1032569 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| ||| | ||||| | |||||||||||| | ||||||||||| ||||| || Sbjct 1032570 ACAATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTG 1032629 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||||||||||||||| ||||| ||| ||| |||| |||||||| ||| | Sbjct 1032630 GAATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCA 1032689 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || || |||||||||||||| |||| |||||| |||||||| |||||| Sbjct 1032690 CTTCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCATA 1032739 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| | || || |||||||| ||||||||||| || | | | ||| Sbjct 1032299 AATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCGATAATGTACGACCATCT 1032358 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 ||||||||||| || || | ||||||||||| ||||| ||||||||| ||||| || Sbjct 1032359 TCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTGGAATTCCCTCTTTATCC 1032418 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| ||| ||| |||| || ||||| ||| || ||||| || |||||| Sbjct 1032419 TGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCAACGTCTAATGTGATGGTT 1032478 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| |||| ||||| || |||||||||||| Sbjct 1032479 TTACCAGTCAATGTTTTCACGAAAATTTGCATA 1032511 Score = 131 bits (144), Expect = 1e-25 Identities = 163/216 (75%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || || ||||| | || || |||||||| ||||| |||||| | ||| ||| | | Sbjct 1031615 AATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCGG--ACAATGTTCGACCAT 1031672 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| |||||||| || || | |||||||| || || || |||||| |||||||||| Sbjct 1031673 CTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTTTGT 1031732 Query 15270 C-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAAT 15327 | | ||||||| || ||| |||| || ||||| | || ||| || || ||||| || Sbjct 1031733 CTTGGATTTTTGCT-TTGACATTTTCGATAGTATC-CGATGGTTCCACTTCCAAGGTGAT 1031790 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||| |||| |||||||| ||||||||||| Sbjct 1031791 GGTTTTACCGGTCAATGTTTTTACGAAAATTTGCAT 1031826 Score = 129 bits (142), Expect = 4e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 |||||| ||||| | || || || ||||| |||||||||||| | | |||| | || Sbjct 1032070 TAAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGGACAAAGTTCTTCCATC 1032129 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| ||||| || || || | ||||| ||||| || || |||||||| |||||||| Sbjct 1032130 TTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCCTCTTTGTC 1032189 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| |||||| |||| || ||||| || || || || ||||| || Sbjct 1032190 CTGGATTTTGGCTTTTACATTTTCGATCGTATCAGATGGCTCGACTTCCAATGTAATAGT 1032249 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| || |||||||| || |||||||||||| Sbjct 1032250 TTTACCGGTAAGAGTTTTGACGAAAATTTGCATA 1032283 Score = 129 bits (142), Expect = 4e-25 Identities = 163/217 (75%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || || ||||| | |||||| ||||||||||| || ||||| | ||| ||| | | Sbjct 1033042 AATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCG--ACAATGTTCGGCCAT 1033099 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| | |||||| ||||| | ||||| ||||| || || |||||| |||||||| | Sbjct 1033100 CTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGAATACCTTCTTTAT 1033159 Query 15270 CACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATT-TTCTACATCTAAGGTAAT 15327 | ||||| ||| || ||| |||| || || || | || ||| || || || ||||| Sbjct 1033160 CCTGGATTTTAGCT-TTCACATTTTCGATAGTGTC-CGATGGTTCGACTTCCAAAGTAAT 1033217 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| || |||| ||||||||| |||||||||||| Sbjct 1033218 GGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCATA 1033254 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | |||||| |||||||| || ||||||||| || | | | ||||| Sbjct 1031846 ACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAATCGGATAAGGTACGGCCATCTTCC 1031905 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| |||||| | ||||||||||| || || |||||| ||||| || || | Sbjct 1031906 AATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTATCTTGA 1031965 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||||| |||| || ||||| | || || || || || || || ||||| Sbjct 1031966 ATCTTGGCTTTTACATTTTCGATTGTATC-CGATGGCTCGACTTCCAAAGTGATCGTTTT 1032024 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| || || || || || |||||||||||| Sbjct 1032025 ACCAGTTAGGGTCTTGACGAAAATTTGCATA 1032055 Score = 118 bits (130), Expect = 8e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| | || || || ||||| || || |||||| | | | | | ||| Sbjct 1033270 AATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCGGACAAAGTACGACCATCT 1033329 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| ||||| | ||||| ||||| || || |||||| |||||||| || Sbjct 1033330 TCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGAATGCCTTCTTTATCT 1033389 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATT-TTCTACATCTAAGGTAATGGT 15330 ||||||| || ||| |||| ||||| || | || ||| || || || || ||||| Sbjct 1033390 TGAATTTTGGCTTTAACATTTTCGATGGTGTC-CGATGGTTCGACTTCCAAAGTGATGGT 1033448 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 |||||| |||| |||||||| || |||||||| |||| Sbjct 1033449 TTTACCAGTCAATGTTTTTACGAAGATTTGCATGATTGA 1033487 >seq391 Length=841353 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | || | ||||| || | ||||| ||||| || || ||||| || Sbjct 251162 CCACCTCTAAGTCGAAGCACTAAGTGTAATGTGGATTCTTTCTGGATATTGTAGTCTGAC 251221 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| | |||||||| ||||| ||||| | || || || |||||||| ||| Sbjct 251222 AAAGTTCTAGAATCTTCTAACTGTTTTCCAGCAAAAATTAATCGCTGTTGGTCTGGCGGA 251281 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| |||||| |||||||| | || || || ||| | ||| || Sbjct 251282 ATCCCTTCTTTGTCCTGAATTTTCATCTTTACACTCTCAATAGTGTCGTTGGGTTCGACT 251341 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || | || |||| ||||| | || |||||||||||||| ||| Sbjct 251342 TCCAAAGATATATTTTTTCCTGTTAAGGTCTTTACAAAAATTTGTATA 251389 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | || || | ||| | || || || ||||| ||||||||||| | Sbjct 250934 CCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATC--TG 250991 Query 15197 AGAATTCTCGCG--TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| |||| || || | ||| || ||||| | || || || ||||| || | Sbjct 250992 ACAATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCG 251051 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| |||||||| || |||||| | || || |||| ||||||||| | |||| Sbjct 251052 GAATCCCTTCTTTATCCTGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTA 251111 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || | | ||| |||| ||||||| |||||||||||||||||||||| Sbjct 251112 CTTCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCATA 251161 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 15131 TGTCTGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAA 15190 ||| | || ||||| | | || ||||| || | || || ||||| || || ||||| Sbjct 251384 TGTATACCTCCTCTAAGCCGTAGCACTAAGTGTAACGTCGATTCTTTCTGGATATTGTAG 251443 Query 15191 TCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCG 15250 || | | |||| | |||||||||||||| ||||| | || || |||||||| || Sbjct 251444 TCTGACAAAGTTCTAGAATCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGTTGATCA 251503 Query 15251 TTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTT 15310 ||||||||||| || || |||||| | || ||| |||| || || || | | Sbjct 251504 GGCGGAATTCCTTCCTTATCCTGAATTTTCGTTTTCACATTTTCAATTGTGTCAGTGGGT 251563 Query 15311 TCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || | | ||| |||||||||| | ||||||||||| || |||||| Sbjct 251564 TCTACCTCAAGCGAAATATTTTTACCTGTTAATGTTTTTACAAATATCTGCATA 251617 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||||| ||||| ||||| || |||||||| ||| || | | | ||| ||| Sbjct 730844 ACTAAATGAATTGTGGATTCTTTCTGGATGTTGTAGTCGGATAAAGTGCGGTTGTCGTCT 730903 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || ||||| | || | | ||| || || ||||||||||||||||| Sbjct 730904 AGTTGCTTACCAGCAAAAATAAGTCTTTGCTGATCCGGGGGAATTCCTTCTTTGTCTTGG 730963 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| | || | || || || || | ||| || || | ||||||| | || Sbjct 730964 ATTTTGGTTTTGATGGACTCAATAGTGTCATTTGGTTCCACCTCCAGGGTAATGTTCTTC 731023 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| | ||||| || ||||| ||||| Sbjct 731024 CCTGTTAATGTTTTCACGAAAATCTGCAT 731052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362173364614002