Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq391 109 5e-19 seq1 109 5e-19 >seq391 Length=841353 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 |||||||| ||||| ||||||| ||||| || || ||||||||||| |||||||| | Sbjct 250933 TCCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGA 250992 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 || ||| | || || || || || || ||| |||| | | ||| ||||| || Sbjct 250993 CAATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGG 251052 Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993 | || ||||| || ||||||| ||| || | | |||||| ||||| Sbjct 251053 AATCCCTTCTTTATCCTGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTAC 251112 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| | ||| |||| ||||| |||||||| |||||||||||||| Sbjct 251113 TTCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 >seq1 Length=3593316 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 ||| |||| ||||| || || ||||||||||| |||||||| | || ||| | | || Sbjct 1032070 TAAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGGACAAAGTTCTTCCATC 1032129 Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 |||| || || || ||| | || | || |||||||| ||| | ||||||||||| Sbjct 1032130 TTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCCTCTTTGTC 1032189 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 ||||| |||||| | ||| ||||| ||||| ||| | ||||| || Sbjct 1032190 CTGGATTTTGGCTTTTACATTTTCGATCGTATCAGATGGCTCGACTTCCAATGTAATAGT 1032249 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||||| || | ||||||||| ||||||||||| Sbjct 1032250 TTTACCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || || || | || |||| || || || || || ||||| ||||| ||||||| Sbjct 1033025 TTCCACCACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCG 1033084 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || |||| | | || || || |||||||| ||| | || | || |||||||| | Sbjct 1033085 ACAATGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTG 1033144 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || ||||| || ||||| ||| || | ||| ||| || || || Sbjct 1033145 GAATACCTTCTTTATCCTGGATTTTAGCTTTCACATTTTCGATAGTGTCCGATGGTTCGA 1033204 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||||||||||| || || |||||||| || ||||||||||| Sbjct 1033205 CTTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || || |||||||| |||||||||| || |||| | | || || |||||||| || Sbjct 1032542 GTCGATTCTTTTTGAATGTTGTAATCCGACAATGTTCGGCCATCTTCAAGCTGTTTGCCA 1032601 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || |||| | | ||||| || || | || |||||||| ||||| || Sbjct 1032602 GCGAAAATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATTTTAGCCTTG 1032661 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||| || ||| ||| | |||||||||||||| || |||||| Sbjct 1032662 ACATTTTCAATGGTATCCGAGGGTTCCACTTCCAATGTAATGGTTTTACCAGTCAAAGTT 1032721 Query 19025 TTGACAAAAATTTGCAT 19041 ||||||||||| ||||| Sbjct 1032722 TTGACAAAAATCTGCAT 1032738 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 ||||| || || | | || |||| || || || || || ||||| || || ||||| Sbjct 1031597 TTTCCACCACGAAGTCGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCG 1031656 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | || |||| | || |||| ||||| || ||| | || | | ||||||||| Sbjct 1031657 GACAATGTTCGACCATCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGT 1031716 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | || |||||||| ||||| ||| || | ||| |||||| || ||| Sbjct 1031717 GGAATACCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCGATAGTATCCGATGGTTCC 1031776 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | ||| ||||||||||| || || ||||| || |||||||||||| Sbjct 1031777 ACTTCCAAGGTGATGGTTTTACCGGTCAATGTTTTTACGAAAATTTGCATT 1031827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414566120454868