Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1 132 3e-26 seq391 131 1e-25 seq768 95.1 8e-15 >seq1 Length=3593316 Score = 132 bits (146), Expect = 3e-26 Identities = 163/219 (74%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || ||||||||||||||||| || ||||| || |||||||| |||||| | | Sbjct 1032068 CGTAAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGGACAAAGTTCTTCCA 1032127 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||||||||| ||| || || |||||||| || | ||| || || ||||| Sbjct 1032128 TCTTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCCTCTTTG 1032187 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTC-GTTGGGTTGAACGTCCAGAGT 33330 || | | | || |||||| ||| ||||| || | ||| | | || |||| || Sbjct 1032188 TCCTGGATTTTGGC---TTTTACATTTTCGATCGTATCAGATGGCTCG-ACTTCCAATGT 1032243 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || ||||||||||| |||||||||||||| Sbjct 1032244 AATAGTTTTACCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 |||||| | || ||||| |||||||||||||| || || ||||| ||||| ||||| || Sbjct 1033254 ACCGCCACGTAGACGCAATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCGGA 1033313 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 |||| | | || |||||||| || ||| ||| || || |||||||| || | || Sbjct 1033314 CAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGG 1033373 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 ||||||||||| || ||| ||| || ||| || ||||| |||| || Sbjct 1033374 AATGCCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCGATGGTGTCCGATGGTTCGAC 1033433 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 |||| ||| || ||||| || || | ||||||||||| ||||||||| || Sbjct 1033434 TTCCAAAGTGATGGTTTTACCAGTCAATGTTTTTACGAAGATTTGCATGATT 1033485 Score = 114 bits (126), Expect = 8e-21 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || | ||| ||||| |||||||| || || || |||||||||||||| ||||| ||| Sbjct 1033027 CCACCACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGAC 1033086 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | | || || | ||| || ||| ||| || || |||||||| || | || Sbjct 1033087 AATGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGA 1033146 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || |||||||| || | | | || ||| || ||| || ||||| |||| Sbjct 1033147 ATACCTTCTTTATCCTGGATTTTAGC---TTTCACATTTTCGATAGTGTCCGATGGTTCG 1033203 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||| ||| || ||||| || || | ||||||||||||||||||||| Sbjct 1033204 ACTTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||||||||| || || || |||||||| ||||||||||| || || | | || || Sbjct 1031845 CACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAATCGGATAAGGTACGGCCATCTTC 1031904 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 |||||| || ||| || || ||||||||||| || | || || ||||| || || Sbjct 1031905 CAATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTATCTTG 1031964 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGT-CGTTGGGTTGAACGTCCAGAGTTATCGTTT 33338 |||| |||||| ||| || || | || ||| | | || |||| ||| ||||||| Sbjct 1031965 AATCTTGGCTTTTACATTTTCGATTGTATCCGATGGCTCG-ACTTCCAAAGTGATCGTTT 1032023 Query 33339 TTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || || |||||||||||||| Sbjct 1032024 TACCAGTTAGGGTCTTGACGAAAATTTGCAT 1032054 Score = 105 bits (116), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||||||| |||||||| |||||||| || || ||||| ||||| | | Sbjct 1031612 CGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCGGACAATGTTCGACCA 1031671 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| ||||| ||| || ||||| ||||| || | || || |||||||| Sbjct 1031672 TCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTTTG 1031731 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || ||| || || || |||| || |||| || Sbjct 1031732 TCTTGGATTTTTGC---TTTGACATTTTCGATAGTATCCGATGGTTCCACTTCCAAGGTG 1031788 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || | |||||||||||||||||||| Sbjct 1031789 ATGGTTTTACCGGTCAATGTTTTTACGAAAATTTGCAT 1031826 Score = 102 bits (112), Expect = 5e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | || ||||| ||||||||||| || ||||||||||| || |||||||| || Sbjct 1032283 ACCACCACGTAGACGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCGA 1032342 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | | || || ||||| || || ||| || |||||||||||||| | || Sbjct 1032343 TAATGTACGACCATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTGG 1032402 Query 33262 TATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || || ||||| || || | ||| || || ||| || || || |||| Sbjct 1032403 AATTCCCTCTTTATCCTGAATTTTTGCC---TTCACATTTTCGATTGTATCAGATGGTTC 1032459 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||| | || || ||||| || || | ||||| |||||||||||||| Sbjct 1032460 AACGTCTAATGTGATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510 Score = 95.1 bits (104), Expect = 8e-15 Identities = 164/234 (70%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | ||| ||||| || | ||| | |||||| |||||||| || |||||||| || Sbjct 1032511 ACCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGA 1032570 Query 33202 CAAATTGAGTTGGTCATC--CAAT-TGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 ||| | | || |||| ||| || || ||| || || |||||||||||||| | Sbjct 1032571 CAATGT---TCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGG 1032627 Query 33259 GGGTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGG 33315 || || |||||||| || | | | ||| || || ||| ||| || || ||| Sbjct 1032628 TGGAATTCCTTCTTTGTCTTGGATTTTAGCC---TTGACATTTTCAATGGTATCCGAGGG 1032684 Query 33316 TTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || |||| || || ||||| || || | |||||| || ||||| ||||| Sbjct 1032685 TTCCACTTCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 >seq391 Length=841353 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| ||||||||||||| |||||| || || || ||||| || |||||||| ||| Sbjct 250934 CCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGAC 250993 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | | || || | |||||||||| ||| ||||| || || || || | || Sbjct 250994 AATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGGA 251053 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || |||||||| || ||| | ||| || ||| ||| || ||||| || | || Sbjct 251054 ATCCCTTCTTTATCCTGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTACT 251113 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||| || ||||||| || | ||||||||| ||||||||||| Sbjct 251114 TCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | || | ||| || || ||||| || ||||| || |||||||| || || Sbjct 251161 ACCACCTCTAAGTCGAAGCACTAAGTGTAATGTGGATTCTTTCTGGATATTGTAGTCTGA 251220 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 |||| | || || || || |||||| ||| ||||| || || ||||| | || Sbjct 251221 CAAAGTTCTAGAATCTTCTAACTGTTTTCCAGCAAAAATTAATCGCTGTTGGTCTGGCGG 251280 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || ||| | ||||| | | ||| ||||||||||||| || Sbjct 251281 AATCCCTTCTTTGTCCTGAATTTTCATCTTTACACTCTCAATAGTGTCGTTGGGTTCGAC 251340 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| || ||| ||||||| || | || ||||| |||||||| || Sbjct 251341 TTCCAAAGATATATTTTTTCCTGTTAAGGTCTTTACAAAAATTTGTAT 251388 >seq768 Length=1243675 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 ||||| | | ||||| |||||| || | |||||||| ||||| || ||||| || | Sbjct 1130696 CCGCCACGCAGCCGCAGCACCAAGTGGATCGTCGACTCCTTTTGGATGTTGTAGTCCGCG 1130755 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || | ||||||||| ||||| || ||| || | ||| |||||||||| || Sbjct 1130756 AGCGTGCGCCCGTCATCCAACTGCTTCCCGGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1130815 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 ||||| || || || ||| ||| || | | ||||||||||| || | || Sbjct 1130816 ATGCCCTCCTTGTCCTGGATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACC 1130875 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || | || ||||| || || || ||||| |||||||| Sbjct 1130876 TCAAGGGTGATGTTCTTCCCCGTGAGCGTCTTCACGAAGATTTGCAT 1130922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318772463895156