Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1 131 1e-25 seq391 104 2e-17 >seq1 Length=3593316 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || |||||||||| || |||||||| || ||||||||| ||| || |||| Sbjct 1031615 AATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCGGACAATGTTCGACCATCT 1031674 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||||||||||||| ||||| ||||| || ||||| || | || | ||||||||| ||| Sbjct 1031675 TCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTTTGTCT 1031734 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 |||||| |||||| | | | |||||| | || ||||| || | || || ||| Sbjct 1031735 TGGATTTTTGCTTTGACATTTTCGATAGTATCCGATGGTTCCACTTCCAAGGTGATGGTT 1031794 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||| || || || || || |||||||| Sbjct 1031795 TTACCGGTCAATGTTTTTACGAAAATTTGCAT 1031826 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||||| ||| |||||||||||||| |||||| ||| ||| |||| || Sbjct 1031845 CACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAATCGGATAAGGTACGGCCATCTTC 1031904 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||||||||| || || || ||||| |||||||| || | || | |||||| |||||| Sbjct 1031905 CAATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTATCTTG 1031964 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| || ||| || | | | ||||| | ||||| || || | || || ||||| Sbjct 1031965 AATCTTGGCTTTTACATTTTCGATTGTATCCGATGGCTCGACTTCCAAAGTGATCGTTTT 1032024 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| |||| ||||| || || |||||||| Sbjct 1032025 ACCAGTTAGGGTCTTGACGAAAATTTGCAT 1032054 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || |||||||| | || || |||||||||||||||||| || ||| |||| Sbjct 1033270 AATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCGGACAAAGTACGACCATCT 1033329 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| || ||||| ||||| |||||||| || | || | |||||||||||| Sbjct 1033330 TCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGAATGCCTTCTTTATCT 1033389 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 |||||| ||| || | | | || || | || || || || | || || ||| Sbjct 1033390 TGAATTTTGGCTTTAACATTTTCGATGGTGTCCGATGGTTCGACTTCCAAAGTGATGGTT 1033449 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| || || || || || || ||||||||| Sbjct 1033450 TTACCAGTCAATGTTTTTACGAAGATTTGCATG 1033482 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || |||||||| | || ||||||||| || || ||||| |||| ||| |||| Sbjct 1032299 AATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCGATAATGTACGACCATCT 1032358 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || |||||||| || ||||| ||||| ||||||||||| | || | || |||||||| Sbjct 1032359 TCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTGGAATTCCCTCTTTATCC 1032418 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||||||| || || | | | ||||| | || || || || | || || ||| Sbjct 1032419 TGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCAACGTCTAATGTGATGGTT 1032478 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || || ||||| || |||||||| Sbjct 1032479 TTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || |||||||||| ||| |||||||| ||||||||||| ||| || |||| Sbjct 1033042 AATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGACAATGTTCGGCCATCT 1033101 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | |||||| || ||||| ||||| |||||||| || | || | |||||||||||| Sbjct 1033102 TCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGAATACCTTCTTTATCC 1033161 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||||| ||| || | | | ||| || | || || || || | ||||| ||| Sbjct 1033162 TGGATTTTAGCTTTCACATTTTCGATAGTGTCCGATGGTTCGACTTCCAAAGTAATGGTT 1033221 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||| || || || |||||||| Sbjct 1033222 TTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||||||||| || ||||| ||| || |||| || | ||||| || || || Sbjct 1032548 TCTTTTTGAATGTTGTAATCCGACAATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAA 1032607 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| ||||||||||| | || | |||||||| ||| ||||| ||||| | Sbjct 1032608 ATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTT 1032667 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||||| | || ||||| || | ||||| |||||||| || ||||| || ||| Sbjct 1032668 TCAATGGTATCCGAGGGTTCCACTTCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACA 1032727 Query 44111 AATATTTGCAT 44121 || || ||||| Sbjct 1032728 AAAATCTGCAT 1032738 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| |||||||| | || || |||||||| || |||||| || | |||| Sbjct 1032070 TAAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGGACAAAGTTCTTCCATC 1032129 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 |||||||| ||||| ||||| ||||| |||||||| || | || | || ||||| || Sbjct 1032130 TTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCCTCTTTGTC 1032189 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 ||||| ||| || | | | ||||| | ||||| || || | ||||| || Sbjct 1032190 CTGGATTTTGGCTTTTACATTTTCGATCGTATCAGATGGCTCGACTTCCAATGTAATAGT 1032249 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||||| | ||| || || || |||||||| Sbjct 1032250 TTTACCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282 >seq391 Length=841353 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||| | ||||||| ||| | || || |||||||| || ||||| Sbjct 250934 CCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGAC 250993 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| ||| |||||| | ||| ||||| ||||| || ||||| || || || | || Sbjct 250994 AATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGGA 251053 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||| |||||| ||| || | ||| ||||| ||||| || Sbjct 251054 ATCCCTTCTTTATCCTGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTACT 251113 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| | ||| |||| || || ||||| || ||||| |||||||| Sbjct 251114 TCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||| | | || ||| || |||| ||| ||||| || ||||| || || Sbjct 251389 ACCTCCTCTAAGCCGTAGCACTAAGTGTAACGTCGATTCTTTCTGGATATTGTAGTCTGA 251448 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | ||| || ||||||||||| ||||| || || ||||| || || | || Sbjct 251449 CAAAGTTCTAGAATCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGTTGATCAGGCGG 251508 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| ||||| |||||| ||| || | ||| || || | || || || Sbjct 251509 AATTCCTTCCTTATCCTGAATTTTCGTTTTCACATTTTCAATTGTGTCAGTGGGTTCTAC 251568 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||| ||||||| ||||| || || |||||||| ||||| Sbjct 251569 CTCAAGCGAAATATTTTTACCTGTTAATGTTTTTACAAATATCTGCAT 251616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354771883867656