Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1 141 8e-29 seq391 105 6e-18 >seq1 Length=3593316 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 19979 TTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCG 20038 ||||| || || | | ||| |||||||||| ||| ||||||||||| ||||| |||||| Sbjct 1031597 TTTCCACCACGAAGTCGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCG 1031656 Query 20039 CCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACG 20098 || ||| | ||||||||||||||| || ||| | || | | ||| ||||| Sbjct 1031657 GACAATGTTCGACCATCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGT 1031716 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | ||||||||||| |||||| ||| || | | | || ||| |||||| Sbjct 1031717 GGAATACCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCGATAGTATCCGATGGTTCC 1031776 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||| ||| |||||||| |||||||| ||||| || |||||||||||| Sbjct 1031777 ACTTCCAAGGTGATGGTTTTACCGGTCAATGTTTTTACGAAAATTTGCATT 1031827 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || ||||| | ||| |||||||||| || |||||||||||||| || ||||| Sbjct 1033025 TTCCACCACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCG 1033084 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 || ||| |||||| | |||||| || ||| | || | | || ||||| | Sbjct 1033085 ACAATGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTG 1033144 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || ||||| |||||| | | | || || ||||| Sbjct 1033145 GAATACCTTCTTTATCCTGGATTTTAGCTTTCACATTTTCGATAGTGTCCGATGGTTCGA 1033204 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| |||||||||||||| ||||| ||||| || ||||||||||| Sbjct 1033205 CTTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || ||||| | ||| || | ||| ||||| ||||||||||| ||||||||||| | Sbjct 1032512 CCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGAC 1032571 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| |||||| | |||||||| || |||| | | || || || || Sbjct 1032572 AATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGA 1032631 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||||| || || | ||| | ||| |||||| | Sbjct 1032632 ATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCACT 1032691 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||||||||| || ||||| |||||||||||||| ||||| Sbjct 1032692 TCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || |||||||| | ||| ||||| ||||| |||||||||||| || |||| | |||| Sbjct 1032071 AAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGGACAAAGTTCTTCCATCT 1032130 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 |||||||| || || ||| | || | | || ||||| ||| | || |||||||| Sbjct 1032131 TCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCCTCTTTGTCC 1032190 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 ||||| ||| || | | | | ||| || || ||||| ||||| ||| Sbjct 1032191 TGGATTTTGGCTTTTACATTTTCGATCGTATCAGATGGCTCGACTTCCAATGTAATAGTT 1032250 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| | |||||||| ||||||||||| Sbjct 1032251 TTACCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || |||| | ||| |||||||| | ||| ||||| ||||| || || |||||| | Sbjct 1033255 CCGCCACGTAGACGCAATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCGGAC 1033314 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||||||||||||| || ||| | || | | || ||||| || Sbjct 1033315 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGA 1033374 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||| || |||||| ||| || | | | | || ||||| | Sbjct 1033375 ATGCCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCGATGGTGTCCGATGGTTCGACT 1033434 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || |||||||| || ||||| ||||| || || |||||||| Sbjct 1033435 TCCAAAGTGATGGTTTTACCAGTCAATGTTTTTACGAAGATTTGCAT 1033481 >seq391 Length=841353 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 19981 TCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCC 20040 |||||||| |||| |||||||| ||| | || ||||| ||||| ||||||||||| Sbjct 250933 TCCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGA 250992 Query 20041 CATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGG 20100 || || ||||| || | ||| || || ||| |||| | || ||||||||| || Sbjct 250993 CAATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGG 251052 Query 20101 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGT 20160 | |||||||| || |||||| |||||| ||| | |||| || || Sbjct 251053 AATCCCTTCTTTATCCTGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTAC 251112 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | | ||| |||| || ||||| ||||| |||||||||||||| Sbjct 251113 TTCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||| || |||| ||| |||||||| || || ||||| || || |||| |||||||||| Sbjct 251179 CACTAAGTGTAATGTGGATTCTTTCTGGATATTGTAGTCTGACAAAGTTCTAGAATCTTC 251238 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 || ||||| || ||| |||| | | |||||| || || | ||||||||||| Sbjct 251239 TAACTGTTTTCCAGCAAAAATTAATCGCTGTTGGTCTGGCGGAATCCCTTCTTTGTCCTG 251298 Query 20119 AATTTT--TTGTTTCAC-CTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 |||||| | || ||| || ||| || ||| ||||| ||||| | || | Sbjct 251299 AATTTTCATCTTTACACTCT---CAATAGTGTCGTTGGGTTCGACTTCCAAAGATATATT 251355 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || || || || || ||||||||||| || Sbjct 251356 TTTTCCTGTTAAGGTCTTTACAAAAATTTGTAT 251388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419580439663482