Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq1 403 2e-107
seq990 127 2e-24
>seq1
Length=3593316
Score = 403 bits (446), Expect = 2e-107
Identities = 655/934 (70%), Gaps = 8/934 (1%)
Strand=Plus/Minus
Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACATTTT 12861
|||||||||| ||| | |||||| | ||| || |||||| ||| ||||
Sbjct 930175 TTAAAAATCAGCATCGGTAACAAATACCTGATCTTCAGGTCGTGACATGACACCACTTTT 930116
Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921
|||||||||| ||| | |||||||||||| |||| ||| |||||||| || || | |||
Sbjct 930115 TTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCTTCTAATGATATTTGTTC 930056
Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAA 12981
||||||||| || |||||| | | ||| | ||||| ||| ||||||| | || ||
Sbjct 930055 CATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACAATCTAATTCAACCAATAA 929996
Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041
| || ||| | | || || || | |||||| | | ||||| || || |||
Sbjct 929995 ACGATCGGCACAATATTCAATATAATCGGACATTAATTTAGCATTCATACCGATCAATGA 929936
Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101
||| || | || || || | ||| | || ||| |||| ||| || || |||| || ||
Sbjct 929935 TACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACAGCATCAATAATAATTTC 929876
Query 13102 TCTTATTACGTTCTC-TAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAAT 13160
||| |||| | | ||||| |||| | ||| | ||||| | ||| |||||||
Sbjct 929875 AACAATT-CGTTGTGATGATGGACGATTACGAATATGATGAAACAAAAGACAGGCAAAAT 929817
Query 13161 CACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAA 13220
|||| || ||||||||||| | || | || |||||||| || ||||| ||||| |
Sbjct 929816 CACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAAAAGGTAAGACCAGGCATTA 929757
Query 13221 GCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAA 13280
| || |||||||| | |||||| || || ||||| ||||| |||||||||||||||||||
Sbjct 929756 GGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCGGAAAAAAATATTCCTTCAA 929697
Query 13281 CTGCTGCAAACGCTATCAACCTTTCACCATACGTA--CTATTTTTACTCTCTATCCACTT 13338
| || ||||| || || || | ||| || | ||| | | | | || | | ||||
Sbjct 929696 CAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGAATCAT-CT-TGTGTCCAACG 929639
Query 13339 TCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATA 13398
| | ||||| || ||||||| | || || | ||| ||| || || |||| | |
Sbjct 929638 TATAGCCCATTTAGCTTTTTTCTCTACACAAGGTAGATTACGTATAGCATTGAATAGAAA 929579
Query 13399 AtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATG 13458
|| || ||| |||| || | | ||| |||| |||||||| |||||||||||||||
Sbjct 929578 ATCTTGTTCATTACGATCCGATACATAGGTATTAATCAATAATGAATACATTTCTGAATG 929519
Query 13459 AATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518
|| |||||| || || ||||| || ||||||||||| | || |||| || || || ||
Sbjct 929518 AACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTGCTTCTGGTATTTGTACATC 929459
Query 13519 -GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaG 13577
|| ||||| | ||| ||||| ||||| ||||| || || ||||| |||||||||||||
Sbjct 929458 ACGAATAAAA-CGTTCAGCTAAATTTTCATTAACAATACCATCACTTGCAGCAAAAAAAG 929400
Query 13578 CAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAAT 13637
| | || || ||| || | |||||| || || || ||||| | || ||
Sbjct 929399 CCAATACATGTGAAATGAAATGTTTTTCATTCGAATTTAATTTATTCCAATGTACAAGAT 929340
Query 13638 CTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCA 13697
| | || |||||| || ||||| |||||||| || || |||| || || |||||
Sbjct 929339 CATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATGCTTCAGCTTTTTTGTACATTG 929280
Query 13698 TCCATATATCCTTATAAACAATGGGAAACACAAC 13731
|||| ||||| | ||| ||| ||||||| |||
Sbjct 929279 TCCAAATATCATGATATTGAATTGGAAACAAAAC 929246
>seq990
Length=1130841
Score = 127 bits (140), Expect = 2e-24
Identities = 342/519 (66%), Gaps = 12/519 (2%)
Strand=Plus/Minus
Query 13165 GTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCC 13224
||||| ||||| ||||| || || ||||| ||| || | ||| || | || ||
Sbjct 1099371 GTGCATGCCTTCGTCTCTCGAAATCAGTTCGTTACTAAACGTCAAACCAGGAAGCAGACC 1099312
Query 13225 TCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGC 13284
|||||||| ||||| || || || ||| ||||| ||| || ||||| || |||||
Sbjct 1099311 GCGTTTTTTCATCCAGAAAATGGCGCAAAAAGAACCGCTAAACAAAATTCCCTCGACTGC 1099252
Query 13285 TGCAAACGCTATCAACCTTTCACCA--TACGTACT-ATTTTTACTCTCTATCCACTTTCT 13341
||||||| ||| | |||| | | || || ||| ||| |||||||||
Sbjct 1099251 ACAGAACGCTAGCAAGCGTTCAGCGATTGAGTTCTCATTATTA------ATCCACTTTAA 1099198
Query 13342 GGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGC--GTTAAATAAATAA 13399
||||| |||||| || |||| || |||| | ||| || | |||| ||
Sbjct 1099197 AGCCCAAAGCGCTTTTGATTCAACGGCTTTAATATGGTTTATAGCTCGAAAAATTTTTAT 1099138
Query 13400 ttttt-ttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATG 13458
|| || || | | || | | |||| ||| |||| || |||||| |||| || ||
Sbjct 1099137 TTGTTCTTGCAGATTGGATTGCAAATAACAATCAATCAGCAAACTATACGTTTCAGAGTG 1099078
Query 13459 AATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518
|||||||||||||| | || || | || ||| |||| || | || |||| ||
Sbjct 1099077 GATATTTTCCATCGCCAACTGAAATGCGTAGAAATCTCTAATTTCAGGGACTTGAAACTC 1099018
Query 13519 GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC 13578
| | |||| | | | | |||||| ||| || |||||||| || |||||||| ||
Sbjct 1099017 GAGGAAAAAACGACGTCCAATGTTTTCTAAAACGATTCCGTCACTTGCTGCAAAAAACGC 1098958
Query 13579 AAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATC 13638
|| | | ||||| || |||||||||| || ||| || |||||| | | ||
Sbjct 1098957 CAGCACATATTTAATGAAACTTTTTTCGTTCTCATTCAAATTATTCCAATCACGCAGGTC 1098898
Query 13639 TTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGC 13677
| | ||||||| || ||| | ||||||||| ||||
Sbjct 1098897 TCCATACAAATCTATTTCTTCAGCCGTCCAAAAACAAGC 1098859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430975456065444
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |