Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1 403 2e-107 seq990 127 2e-24 >seq1 Length=3593316 Score = 403 bits (446), Expect = 2e-107 Identities = 655/934 (70%), Gaps = 8/934 (1%) Strand=Plus/Minus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACATTTT 12861 |||||||||| ||| | |||||| | ||| || |||||| ||| |||| Sbjct 930175 TTAAAAATCAGCATCGGTAACAAATACCTGATCTTCAGGTCGTGACATGACACCACTTTT 930116 Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 |||||||||| ||| | |||||||||||| |||| ||| |||||||| || || | ||| Sbjct 930115 TTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCTTCTAATGATATTTGTTC 930056 Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAA 12981 ||||||||| || |||||| | | ||| | ||||| ||| ||||||| | || || Sbjct 930055 CATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACAATCTAATTCAACCAATAA 929996 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 | || ||| | | || || || | |||||| | | ||||| || || ||| Sbjct 929995 ACGATCGGCACAATATTCAATATAATCGGACATTAATTTAGCATTCATACCGATCAATGA 929936 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 ||| || | || || || | ||| | || ||| |||| ||| || || |||| || || Sbjct 929935 TACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACAGCATCAATAATAATTTC 929876 Query 13102 TCTTATTACGTTCTC-TAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAAT 13160 ||| |||| | | ||||| |||| | ||| | ||||| | ||| ||||||| Sbjct 929875 AACAATT-CGTTGTGATGATGGACGATTACGAATATGATGAAACAAAAGACAGGCAAAAT 929817 Query 13161 CACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAA 13220 |||| || ||||||||||| | || | || |||||||| || ||||| ||||| | Sbjct 929816 CACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAAAAGGTAAGACCAGGCATTA 929757 Query 13221 GCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAA 13280 | || |||||||| | |||||| || || ||||| ||||| ||||||||||||||||||| Sbjct 929756 GGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCGGAAAAAAATATTCCTTCAA 929697 Query 13281 CTGCTGCAAACGCTATCAACCTTTCACCATACGTA--CTATTTTTACTCTCTATCCACTT 13338 | || ||||| || || || | ||| || | ||| | | | | || | | |||| Sbjct 929696 CAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGAATCAT-CT-TGTGTCCAACG 929639 Query 13339 TCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATA 13398 | | ||||| || ||||||| | || || | ||| ||| || || |||| | | Sbjct 929638 TATAGCCCATTTAGCTTTTTTCTCTACACAAGGTAGATTACGTATAGCATTGAATAGAAA 929579 Query 13399 AtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATG 13458 || || ||| |||| || | | ||| |||| |||||||| ||||||||||||||| Sbjct 929578 ATCTTGTTCATTACGATCCGATACATAGGTATTAATCAATAATGAATACATTTCTGAATG 929519 Query 13459 AATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 || |||||| || || ||||| || ||||||||||| | || |||| || || || || Sbjct 929518 AACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTGCTTCTGGTATTTGTACATC 929459 Query 13519 -GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaG 13577 || ||||| | ||| ||||| ||||| ||||| || || ||||| ||||||||||||| Sbjct 929458 ACGAATAAAA-CGTTCAGCTAAATTTTCATTAACAATACCATCACTTGCAGCAAAAAAAG 929400 Query 13578 CAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAAT 13637 | | || || ||| || | |||||| || || || ||||| | || || Sbjct 929399 CCAATACATGTGAAATGAAATGTTTTTCATTCGAATTTAATTTATTCCAATGTACAAGAT 929340 Query 13638 CTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCA 13697 | | || |||||| || ||||| |||||||| || || |||| || || ||||| Sbjct 929339 CATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATGCTTCAGCTTTTTTGTACATTG 929280 Query 13698 TCCATATATCCTTATAAACAATGGGAAACACAAC 13731 |||| ||||| | ||| ||| ||||||| ||| Sbjct 929279 TCCAAATATCATGATATTGAATTGGAAACAAAAC 929246 >seq990 Length=1130841 Score = 127 bits (140), Expect = 2e-24 Identities = 342/519 (66%), Gaps = 12/519 (2%) Strand=Plus/Minus Query 13165 GTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCC 13224 ||||| ||||| ||||| || || ||||| ||| || | ||| || | || || Sbjct 1099371 GTGCATGCCTTCGTCTCTCGAAATCAGTTCGTTACTAAACGTCAAACCAGGAAGCAGACC 1099312 Query 13225 TCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGC 13284 |||||||| ||||| || || || ||| ||||| ||| || ||||| || ||||| Sbjct 1099311 GCGTTTTTTCATCCAGAAAATGGCGCAAAAAGAACCGCTAAACAAAATTCCCTCGACTGC 1099252 Query 13285 TGCAAACGCTATCAACCTTTCACCA--TACGTACT-ATTTTTACTCTCTATCCACTTTCT 13341 ||||||| ||| | |||| | | || || ||| ||| ||||||||| Sbjct 1099251 ACAGAACGCTAGCAAGCGTTCAGCGATTGAGTTCTCATTATTA------ATCCACTTTAA 1099198 Query 13342 GGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGC--GTTAAATAAATAA 13399 ||||| |||||| || |||| || |||| | ||| || | |||| || Sbjct 1099197 AGCCCAAAGCGCTTTTGATTCAACGGCTTTAATATGGTTTATAGCTCGAAAAATTTTTAT 1099138 Query 13400 ttttt-ttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATG 13458 || || || | | || | | |||| ||| |||| || |||||| |||| || || Sbjct 1099137 TTGTTCTTGCAGATTGGATTGCAAATAACAATCAATCAGCAAACTATACGTTTCAGAGTG 1099078 Query 13459 AATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 |||||||||||||| | || || | || ||| |||| || | || |||| || Sbjct 1099077 GATATTTTCCATCGCCAACTGAAATGCGTAGAAATCTCTAATTTCAGGGACTTGAAACTC 1099018 Query 13519 GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC 13578 | | |||| | | | | |||||| ||| || |||||||| || |||||||| || Sbjct 1099017 GAGGAAAAAACGACGTCCAATGTTTTCTAAAACGATTCCGTCACTTGCTGCAAAAAACGC 1098958 Query 13579 AAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATC 13638 || | | ||||| || |||||||||| || ||| || |||||| | | || Sbjct 1098957 CAGCACATATTTAATGAAACTTTTTTCGTTCTCATTCAAATTATTCCAATCACGCAGGTC 1098898 Query 13639 TTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGC 13677 | | ||||||| || ||| | ||||||||| |||| Sbjct 1098897 TCCATACAAATCTATTTCTTCAGCCGTCCAAAAACAAGC 1098859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430975456065444