Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1 105 6e-18 seq391 91.5 1e-13 >seq1 Length=3593316 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || || | || || | ||||||||| || ||||||||||||||||| | Sbjct 1032511 ACCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGA 1032570 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| ||| | || || ||||| || || || |||| ||||| ||||| || || Sbjct 1032571 CAATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGG 1032630 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||| ||||| ||||| ||||| | | |||||||| | | ||| Sbjct 1032631 AATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCAC 1032690 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||| ||||||||||| || | |||||| |||||||||||||| Sbjct 1032691 TTCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 >seq391 Length=841353 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/237 (70%), Gaps = 12/237 (5%) Strand=Plus/Plus Query 48496 AAAACCTCCGCGCAACCTTAACACTAAATG--AAGTGTGCTCTCCTTTTGAATGTTGTAA 48553 ||| ||||| | ||||| ||||| | ||| |||| || | |||||||||||||||||| Sbjct 250930 AAATCCTCCTCTCAACCGCAACACCAGATGCAAAGT-TGAT-TCCTTTTGAATGTTGTAA 250987 Query 48554 TCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCC 48613 || | |||| ||| || || || ||||| || | ||||||| ||||| ||||| Sbjct 250988 TCTGACAATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCA 251047 Query 48614 ACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCT----ATGGTATCGGT 48669 ||| | | ||| || ||| ||||||| | | | ||||| ||||||||| | Sbjct 251048 GGCGGAATCCCTTCTTTATCCTGAATTTTC-GTT---TTCACGCTTTCAATGGTATCGTT 251103 Query 48670 AGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||| |||| | || |||| || || | |||||| |||||||| ||||| Sbjct 251104 TGGCTCTACTTCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421244412853322