Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq458 241 2e-58
seq535 178 2e-39
>seq458
Length=503182
Score = 241 bits (266), Expect = 2e-58
Identities = 264/349 (76%), Gaps = 4/349 (1%)
Strand=Plus/Plus
Query 7060 GATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTT 7119
|||||||||||||| || || | ||||| | |||||||||||||||||| | | || ||
Sbjct 280681 GATGGATTCCAAGCCGTTATAATCATACGACGATCATTTGGATTTGTTTTGATTGTTTTT 280740
Query 7120 ATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAA 7179
|||| || ||||||||| ||||| ||||| | ||||| ||| ||| || |||
Sbjct 280741 ATAAGCTGTTTTAATTGATCAATACCTTGACCATTATAATCAGTTTGATTATCACGATAT 280800
Query 7180 TTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGA 7239
| || |||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||
Sbjct 280801 TCGGCACCAAAATGTCTCCATTGAAAACCATAAACAGGACCTAGATCACCTTCTTGACGA 280860
Query 7240 TGATTAAATCCTAATCGAT--TTAAATTAGATTTTGATCCATAAGCATCCCAAATATGTA 7297
| | |||| || | | || ||||| |||||| |||| ||||||||||| | ||
Sbjct 280861 TCAATAAAACCAAGACTATCAAGAAATT--CTTTTGAACCATTTGCATCCCAAATTTTTA 280918
Query 7298 CAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTT 7357
|| ||||| ||||| ||| |||| || || ||||| | |||||||| | |||||
Sbjct 280919 CACCTTTTTCGGATAATTTTTTCGAATCAGTTGAACCTTTTATAAACCATAATAATTCTT 280978
Query 7358 CTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAATGT 7406
| || | ||||||||||| | | |||||| |||| || || |||||
Sbjct 280979 CAACAACACCACGCCAAAATACACGTTTTGTTGTGATCAATGGTAATGT 281027
Score = 84.2 bits (92), Expect = 3e-11
Identities = 94/123 (76%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 6831 ATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATC 6890
|||||| ||||||||| ||||| || | ||||||||||||||||| | ||| | |||
Sbjct 280330 ATGATCACGATAAATATGTGCATCACCAATTGTATGAATAAATTCACCAGTTTTTA-ATC 280388
Query 6891 AAC-AGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACAC 6949
|| | | | ||||||||||| ||||||||||| ||| || | || || || ||||
Sbjct 280389 CACAAACATTAGCAATTAAATGTGTTAATAATGAATAGCTGGCAATGTTGAATGGAACAC 280448
Query 6950 CTA 6952
|||
Sbjct 280449 CTA 280451
>seq535
Length=823324
Score = 178 bits (196), Expect = 2e-39
Identities = 477/726 (66%), Gaps = 20/726 (3%)
Strand=Plus/Minus
Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451
|||||| |||||||| ||||| | ||||| ||||| ||||||| | ||| |||
Sbjct 329953 AATTGGGATTTTGAATCTATGGGCATCGGTGGCCTAGACAGAGAATTCAATGCTATATTC 329894
Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511
| || || ||||| ||| | | ||||| || ||||| || || | || |||
Sbjct 329893 CGTCGGGCTTTTGCATCTCGTGTATTTCCTCCTGAGATAATCGAAGAACTTGGTATCAAA 329834
Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571
||| | || ||| | || ||| || |||||| || || || || |||||| ||
Sbjct 329833 CATGTTCGTGGTATTCTTCTATTTGGTCCACCTGGTACTGGCAAGACTTTGATGGCTAGA 329774
Query 164572 TGCATTGCTCAAGCTTTTAAA--TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629
|||| || || || ||| || || ||||| |||||||| ||| || |||
Sbjct 329773 CAGATTGGAAAAATGTTGAACGCTCGTGAACCA--AAAATCGTTAATGGACCTCAAATAT 329716
Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689
| |||| ||||| || || || ||||| || || | || ||||| | || |||||||
Sbjct 329715 TAGACAAGTATGTTGGCGAATCTGAAGCAAACATTCGTAAATTGTTCGAAGATGCTGAAG 329656
Query 164690 AAGAACAA--AAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGAT 164747
|||||||| | ||| | ||| | ||| ||||| ||||| |||| ||||| ||
Sbjct 329655 AAGAACAAGCACGAATG--GGTATCAATAGCGGTTTACACATTATTATTTTCGATGAAAT 329598
Query 164748 AGATGCTCTTTGCAA--------AAAACGTGGTGATAATAT----TATTCATGATGCAGT 164795
||||| | ||||| | |||| || || |||||||| ||||
Sbjct 329597 CGATGCCATCTGCAAGGCTCGAGGATCGGTGGCCGGAACATCGGCCGTTCATGATACAGT 329538
Query 164796 GGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGT 164855
|| ||||||||| | | ||||| ||||| || || || | || || || ||| | |
Sbjct 329537 TGTCAATCAGTTGTTGGCCAAAATTGATGGCGTTGATTCGCTGAACAACATCTTAGTCAT 329478
Query 164856 AGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGA 164915
|||||||| ||||| || | |||||||| || || | |||||||||||| | ||
Sbjct 329477 CGGTATGACTAACCGTAAAGACATGATTGATGAGGCATTGCTTCGACCTGGTCGACTTGA 329418
Query 164916 ATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCA 164975
| || |||| ||||| | | || | ||||||| || ||||||| || || ||||
Sbjct 329417 AGTGCAAATGGAAATCAGTCTTCCTAATGAAGAAGGTCGTGTTCAAATATTGAACATTCA 329358
Query 164976 TGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATAGC 165035
| ||||||| | | | | | | |||||||| || | || | ||
Sbjct 329357 TACCAGTAAAATGCGTCAGTACAAAAAAGTTGCGCCCGATGTTGACATTCGAGAATTGGC 329298
Query 165036 TGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCCGCTCAATC 165095
| |||||||||| | ||||| ||| | || || ||||| || || ||||||||
Sbjct 329297 AACATTGACTAAAAATTTTTCCGGTGCCGAAATTGAAGGCTTAGTTAGGGCGGCTCAATC 329238
Query 165096 AACCGC 165101
||| ||
Sbjct 329237 AACTGC 329232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595862153215200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |