Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq458 241 2e-58 seq535 178 2e-39 >seq458 Length=503182 Score = 241 bits (266), Expect = 2e-58 Identities = 264/349 (76%), Gaps = 4/349 (1%) Strand=Plus/Plus Query 7060 GATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTT 7119 |||||||||||||| || || | ||||| | |||||||||||||||||| | | || || Sbjct 280681 GATGGATTCCAAGCCGTTATAATCATACGACGATCATTTGGATTTGTTTTGATTGTTTTT 280740 Query 7120 ATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAA 7179 |||| || ||||||||| ||||| ||||| | ||||| ||| ||| || ||| Sbjct 280741 ATAAGCTGTTTTAATTGATCAATACCTTGACCATTATAATCAGTTTGATTATCACGATAT 280800 Query 7180 TTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGA 7239 | || |||||||||||||||||||| ||||||| |||||||| ||||||||||| |||| Sbjct 280801 TCGGCACCAAAATGTCTCCATTGAAAACCATAAACAGGACCTAGATCACCTTCTTGACGA 280860 Query 7240 TGATTAAATCCTAATCGAT--TTAAATTAGATTTTGATCCATAAGCATCCCAAATATGTA 7297 | | |||| || | | || ||||| |||||| |||| ||||||||||| | || Sbjct 280861 TCAATAAAACCAAGACTATCAAGAAATT--CTTTTGAACCATTTGCATCCCAAATTTTTA 280918 Query 7298 CAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTT 7357 || ||||| ||||| ||| |||| || || ||||| | |||||||| | ||||| Sbjct 280919 CACCTTTTTCGGATAATTTTTTCGAATCAGTTGAACCTTTTATAAACCATAATAATTCTT 280978 Query 7358 CTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAATGT 7406 | || | ||||||||||| | | |||||| |||| || || ||||| Sbjct 280979 CAACAACACCACGCCAAAATACACGTTTTGTTGTGATCAATGGTAATGT 281027 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 6831 ATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATC 6890 |||||| ||||||||| ||||| || | ||||||||||||||||| | ||| | ||| Sbjct 280330 ATGATCACGATAAATATGTGCATCACCAATTGTATGAATAAATTCACCAGTTTTTA-ATC 280388 Query 6891 AAC-AGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACAC 6949 || | | | ||||||||||| ||||||||||| ||| || | || || || |||| Sbjct 280389 CACAAACATTAGCAATTAAATGTGTTAATAATGAATAGCTGGCAATGTTGAATGGAACAC 280448 Query 6950 CTA 6952 ||| Sbjct 280449 CTA 280451 >seq535 Length=823324 Score = 178 bits (196), Expect = 2e-39 Identities = 477/726 (66%), Gaps = 20/726 (3%) Strand=Plus/Minus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||||| |||||||| ||||| | ||||| ||||| ||||||| | ||| ||| Sbjct 329953 AATTGGGATTTTGAATCTATGGGCATCGGTGGCCTAGACAGAGAATTCAATGCTATATTC 329894 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 | || || ||||| ||| | | ||||| || ||||| || || | || ||| Sbjct 329893 CGTCGGGCTTTTGCATCTCGTGTATTTCCTCCTGAGATAATCGAAGAACTTGGTATCAAA 329834 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 ||| | || ||| | || ||| || |||||| || || || || |||||| || Sbjct 329833 CATGTTCGTGGTATTCTTCTATTTGGTCCACCTGGTACTGGCAAGACTTTGATGGCTAGA 329774 Query 164572 TGCATTGCTCAAGCTTTTAAA--TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 |||| || || || ||| || || ||||| |||||||| ||| || ||| Sbjct 329773 CAGATTGGAAAAATGTTGAACGCTCGTGAACCA--AAAATCGTTAATGGACCTCAAATAT 329716 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | |||| ||||| || || || ||||| || || | || ||||| | || ||||||| Sbjct 329715 TAGACAAGTATGTTGGCGAATCTGAAGCAAACATTCGTAAATTGTTCGAAGATGCTGAAG 329656 Query 164690 AAGAACAA--AAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGAT 164747 |||||||| | ||| | ||| | ||| ||||| ||||| |||| ||||| || Sbjct 329655 AAGAACAAGCACGAATG--GGTATCAATAGCGGTTTACACATTATTATTTTCGATGAAAT 329598 Query 164748 AGATGCTCTTTGCAA--------AAAACGTGGTGATAATAT----TATTCATGATGCAGT 164795 ||||| | ||||| | |||| || || |||||||| |||| Sbjct 329597 CGATGCCATCTGCAAGGCTCGAGGATCGGTGGCCGGAACATCGGCCGTTCATGATACAGT 329538 Query 164796 GGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGT 164855 || ||||||||| | | ||||| ||||| || || || | || || || ||| | | Sbjct 329537 TGTCAATCAGTTGTTGGCCAAAATTGATGGCGTTGATTCGCTGAACAACATCTTAGTCAT 329478 Query 164856 AGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGA 164915 |||||||| ||||| || | |||||||| || || | |||||||||||| | || Sbjct 329477 CGGTATGACTAACCGTAAAGACATGATTGATGAGGCATTGCTTCGACCTGGTCGACTTGA 329418 Query 164916 ATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCA 164975 | || |||| ||||| | | || | ||||||| || ||||||| || || |||| Sbjct 329417 AGTGCAAATGGAAATCAGTCTTCCTAATGAAGAAGGTCGTGTTCAAATATTGAACATTCA 329358 Query 164976 TGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATAGC 165035 | ||||||| | | | | | | |||||||| || | || | || Sbjct 329357 TACCAGTAAAATGCGTCAGTACAAAAAAGTTGCGCCCGATGTTGACATTCGAGAATTGGC 329298 Query 165036 TGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCCGCTCAATC 165095 | |||||||||| | ||||| ||| | || || ||||| || || |||||||| Sbjct 329297 AACATTGACTAAAAATTTTTCCGGTGCCGAAATTGAAGGCTTAGTTAGGGCGGCTCAATC 329238 Query 165096 AACCGC 165101 ||| || Sbjct 329237 AACTGC 329232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595862153215200