Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 seq391 120 3e-22 >seq1 Length=3593316 Score = 143 bits (158), Expect = 2e-29 Identities = 183/251 (73%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 94763 TTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || || || | | ||||| ||||| ||||| || ||||||| Sbjct 1033235 TTTTTACGAAAATTTGCATACCGCCACGTAGACGCAATACCAAATGCAATGTTGATTCCT 1033294 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 |||| | ||||||||| || ||| ||| |||| ||||| || ||||||| | Sbjct 1033295 TTTGAATATTATAATCGGACAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATCA 1033354 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 ||| |||||||||||| ||||| |||||||| || | |||||| || || || ||| Sbjct 1033355 ATCGTTGCTGATCTGGTGGAATGCCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCGA 1033414 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 ||||| | | ||||| || | ||||||||||| ||||| | ||||| || |||| Sbjct 1033415 TGGTGTCCGATGGTTCGACTTCCAAAGTGATGGTTTTACCAGTCAATGTTTTTACGAAGA 1033474 Query 95001 TCTGCATGCTT 95011 | |||||| || Sbjct 1033475 TTTGCATGATT 1033485 Score = 140 bits (154), Expect = 3e-28 Identities = 163/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 |||||| ||||| || || || ||||| ||||| | |||||||||| || |||| || Sbjct 1031611 TCGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCGGACAA--TGTTCGA 1031668 Query 94852 --ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 ||| |||| ||||||||| ||||||| || | ||||||||||| |||||||||||| Sbjct 1031669 CCATCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCT 1031728 Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969 ||||| | |||||||| ||||| ||| ||| || | | || || || | ||| Sbjct 1031729 TTGTCTTGGATTTTTGCTTTGACATTTTCGATAGTATCCGATGGTTCCACTTCCAAGGTG 1031788 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || || | ||||| || || || ||||| Sbjct 1031789 ATGGTTTTACCGGTCAATGTTTTTACGAAAATTTGCAT 1031826 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || || ||||| ||||| || ||||||||||| | ||| |||||| || ||| | | Sbjct 1032068 CGTAAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGGACAAAGTTCTTCCA 1032127 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| || |||||| ||||||| |||| |||||||||||| ||||| || |||||| Sbjct 1032128 TCTTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCCTCTTTG 1032187 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| || || || ||| || |||| | ||||| || | || || Sbjct 1032188 TCCTGGATTTTGGCTTTTACATTTTCGATCGTATCAGATGGCTCGACTTCCAATGTAATA 1032247 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || ||||||||||| || || || ||||| Sbjct 1032248 GTTTTACCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282 Score = 136 bits (150), Expect = 4e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| || | || ||||| ||||| || || || ||||| ||||| | Sbjct 1033014 AAAAATTTGCATTCCACCACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTAT 1033073 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 |||||||| || || | ||| || || ||||| || ||||||| |||| ||| Sbjct 1033074 ATTATAATCCGACAATGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTG 1033133 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||||||| |||||||||||||| || | ||||| || || || ||| |||||| Sbjct 1033134 CTGATCTGGTGGAATACCTTCTTTATCCTGGATTTTAGCTTTCACATTTTCGATAGTGTC 1033193 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| || | || |||||||| ||||| | |||||| || || || ||||| Sbjct 1033194 CGATGGTTCGACTTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253 Score = 129 bits (142), Expect = 5e-25 Identities = 160/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| ||||| |||||||| || || ||||| | ||| ||||| ||| ||| || Sbjct 1032296 CGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCG--ATAATGTACGAC 1032353 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| || | ||||| ||| ||||||| || | |||||| ||||| ||||| || |||| Sbjct 1032354 CATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTGGAATTCCCTCTT 1032413 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | |||||||||||| || ||| || |||| | || ||||| | |||| Sbjct 1032414 TATCCTGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCAACGTCTAATGTGA 1032473 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| ||||| | |||||||| || || ||||| Sbjct 1032474 TGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510 Score = 111 bits (122), Expect = 1e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || | |||||||| || | || | || ||||| ||||| | | Sbjct 1032500 AAAATTTGCATACCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATG 1032559 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || ||||| || || | ||| || |||||||| || | || || || | |||| Sbjct 1032560 TTGTAATCCGACAATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGC 1032619 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| ||||| ||||||||||| | ||||| |||||||| | | || || Sbjct 1032620 TGGTCTGGTGGAATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCC 1032679 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | | || || || | || |||||||| ||||| | |||||| ||||| |||||||| Sbjct 1032680 GAGGGTTCCACTTCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 Score = 91.5 bits (100), Expect = 1e-13 Identities = 169/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 94763 TTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || ||| || | | || | |||||| || || || ||||| | Sbjct 1031808 TTTTTACGAAAATTTGCATTCCACCACGGAGACGAAGCACCAAATGTAAGGTGGATTCTT 1031867 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 |||| | || |||||| | || | ||| |||| ||||| || | || || | Sbjct 1031868 TTTGAATATTGTAATCGGATAAGGTACGGCCATCTTCCAATTGTTTACCAGCGAAAATCA 1031927 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 | | |||||||||||| ||||||||||| || || | ||| || || || || ||| Sbjct 1031928 AACGTTGCTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTGGCTTTTACATTTTCGA 1031987 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 || || | | ||||| || | ||||| ||||| ||||| || || || || || | Sbjct 1031988 TTGTATCCGATGGCTCGACTTCCAAAGTGATCGTTTTACCAGTTAGGGTCTTGACGAAAA 1032047 Query 95001 TCTGCAT 95007 | ||||| Sbjct 1032048 TTTGCAT 1032054 >seq391 Length=841353 Score = 120 bits (132), Expect = 3e-22 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| | |||||||||||| |||||||||| |||||||| ||||||||||| | ||| || Sbjct 250927 TTAAAATCCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTA 250986 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 ||| || || ||||| || || || ||||| |||| ||||| | || ||||| Sbjct 250987 ATCTGACAATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATC 251046 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 || ||||| |||||||| || | |||||| | || ||| | | || || | || Sbjct 251047 AGGCGGAATCCCTTCTTTATCCTGAATTTTCGTTTTCACGCTTTCAATGGTATC-GTTTG 251105 Query 94954 G-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | | || ||||||| || | |||||| ||||| || ||||| Sbjct 251106 GCTCTACTTCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 Score = 102 bits (112), Expect = 7e-17 Identities = 170/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 94762 TTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTT 94821 |||| |||| ||| || || ||||| | ||| | ||| ||||| || || ||||| || Sbjct 251143 TTTTACAAAAATTTGCATACCACCTCTAAGTCGAAGCACTAAGTGTAATGTGGATTCTTT 251202 Query 94822 TTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAA 94881 || | || || || || ||| | ||||| || | ||||||||| |||| ||||| Sbjct 251203 CTGGATATTGTAGTCTGACAAAGTTCTAGAATCTTCTAACTGTTTTCCAGCAAAAATTAA 251262 Query 94882 TCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGAC 94941 || || || ||||| ||||| ||||||||||| | |||||| ||| || | | Sbjct 251263 TCGCTGTTGGTCTGGCGGAATCCCTTCTTTGTCCTGAATTTTCATCTTTACACTCTCAAT 251322 Query 94942 AGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGAT 95001 |||||| | | ||||| || | | || ||||||| || | || || ||||| || Sbjct 251323 AGTGTCGTTGGGTTCGACTTCCAAAGATATATTTTTTCCTGTTAAGGTCTTTACAAAAAT 251382 Query 95002 CTGCAT 95007 || || Sbjct 251383 TTGTAT 251388 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | || | ||| || || | || ||||| || || | ||| || ||| Sbjct 730826 CCTCCTCTAAGACGAAGCACTAAATGAATTGTGGATTCTTTCTGGATGTTGTAGTCGGAT 730885 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | || || || || || || |||| || | |||||||||||| || ||| Sbjct 730886 AAAGTGCGGTTGTCGTCTAGTTGCTTACCAGCAAAAATAAGTCTTTGCTGATCCGGGGGA 730945 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| | ||||| | |||| || | | ||||||| | || || Sbjct 730946 ATTCCTTCTTTGTCTTGGATTTTGGTTTTGATGGACTCAATAGTGTCATTTGGTTCCACC 731005 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||| | || || || | |||||||| || |||||||| Sbjct 731006 TCCAGGGTAATGTTCTTCCCTGTTAATGTTTTCACGAAAATCTGCAT 731052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448283791987920