Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq202 217 2e-52 seq453 214 3e-51 seq435 196 8e-46 seq768 134 2e-27 seq1101 86.0 1e-12 >seq202 Length=129526 Score = 217 bits (240), Expect = 2e-52 Identities = 209/268 (78%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | |||||| ||||| |||||||| ||||| || || || || Sbjct 89023 GCAAAACGTCATCGTAAAGTTCTTCGTGATAATATCCAAGGTATCACAAAACCGGCCATT 88964 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||||||||||||||| ||||| ||| | || |||||| |||| ||||| | | Sbjct 88963 CGTCGATTGGCTCGTCGTGGTGGTGTCAAACGTATTTCCGGATTGATCTACGAAGAAACT 88904 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | || | |||||| | | ||||||| ||||||| | ||||||||| Sbjct 88903 CGAGGTGTCCTTAAAGTTTTCCTCGAAAATGTTATCCGTGATGCTGTTACCTATACCGAA 88844 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||||||||||| ||||||||| | |||||| |||| ||||| |||||||| ||||| Sbjct 88843 CATGCTAAACGTAAAACTGTCACCGCTATGGATGTCGTTTATGCTTTGAAACGACAAGGA 88784 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | |||||||| || |||||| Sbjct 88783 CGTACCTTGTATGGTTTCGGCGGTTAAT 88756 Score = 156 bits (172), Expect = 7e-34 Identities = 167/218 (77%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 16484 CCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTAT 16543 || ||||||||||| |||||||||||||||| || || || | || |||||| |||| Sbjct 94966 CCGGCTATCCGTCGATTGGCTCGTCGTGGTGGTGTTAAACGCATTTCCGGATTGATCTAC 94907 Query 16544 GAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCA 16602 ||||| | || | ||| | || | |||||| | | || || | ||||||| || || Sbjct 94906 GAAGAAACCCGAGGTGTCCTCAAAGTTTTCCTCGAAAATGTCATTCGTGATGCTGTTACA 94847 Query 16603 CTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 |||||||| || ||||||||||| || |||||| | |||||| |||| ||||| ||||| Sbjct 94846 -TATACCGAACATGCTAAACGTAAAACCGTCACCGCTATGGATGTCGTTTATGCTTTGAA 94788 Query 16663 ACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 ||| ||||| |||| | |||||||| || |||||| Sbjct 94787 ACGACAAGGACGTACCTTGTATGGTTTCGGCGGTTAAT 94750 Score = 143 bits (158), Expect = 4e-30 Identities = 144/187 (77%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | |||||| ||||| |||||||| ||||| || || || || Sbjct 90191 CGCTAAACGTCATCGTAAAGTTCTTCGTGATAATATCCAAGGTATCACAAAACCGGCCAT 90132 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||||||||||||||| ||||| ||| | || |||||| |||| ||||| | Sbjct 90131 TCGTCGATTGGCTCGTCGTGGTGGTGTCAAACGTATTTCCGGATTGATCTACGAAGAAAC 90072 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | || | |||||| | | ||||||| ||||||| | ||||||||| Sbjct 90071 TCGAGGTGTCCTTAAAGTTTTCCTCGAAAATGTTATCCGTGATGCTGTTACCTATACCGA 90012 Query 16612 GCACGCT 16618 || ||| Sbjct 90011 ACATGCT 90005 >seq453 Length=90007 Score = 214 bits (236), Expect = 3e-51 Identities = 211/270 (78%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | |||||| ||||| |||||||| || || || || ||||| Sbjct 12601 CGCTAAACGTCATCGTAAAGTTCTTCGTGATAATATCCAAGGTATTACAAAACCGGCTAT 12542 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||||||||||||||| ||||| ||| | || || ||| |||| ||||| | Sbjct 12541 TCGTCGATTGGCTCGTCGTGGTGGTGTCAAACGTATTTCCGGCTTGATCTACGAAGAAAC 12482 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 ||| | ||| |||| | ||||| | | ||||||| ||||||| || || ||||||| Sbjct 12481 TCGAGGTGTCCTGAAAGTTTTCCTTGAAAATGTTATCCGTGATGCTGTTACA-TATACCG 12423 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | || ||||||||||| || |||||| | |||||| | || ||||| |||||||| |||| Sbjct 12422 AACATGCTAAACGTAAAACAGTCACCGCTATGGATGTTGTTTATGCTTTGAAACGACAAG 12363 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | |||| | ||||||||||| |||||| Sbjct 12362 GACGTACTTTGTATGGTTTTGGCGGTTAAT 12333 >seq435 Length=2731825 Score = 196 bits (216), Expect = 8e-46 Identities = 207/270 (77%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | |||||| ||||| |||||||| ||||| || || ||||| Sbjct 2608293 GCCAAACGTCATCGTAAAGTTCTTCGTGATAATATCCAAGGTATCACAAAACCGGCTATT 2608352 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||| ||||| ||| | || || ||| |||| ||||| | Sbjct 2608353 CGTCGTCTTGCTCGTCGTGGTGGTGTCAAACGTATTTCCGGCTTGATCTACGAAGAAACC 2608412 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGA 16611 || | ||| | || | |||||| | | ||||||| ||||||| || || ||||| || Sbjct 2608413 CGAGGTGTACTCAAAGTTTTCCTCGAAAATGTTATCCGTGATGCTGTTACA-TATACTGA 2608471 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || |||||||| || || ||| |||||||| | || |||||| | ||||| ||||| Sbjct 2608472 ACATGCAAAACGTAAAACCGTAACCGCCATGGATGTTGTTTATGCACTCAAACGACAAGG 2608531 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATC 16701 |||| | |||||||| || ||||||| Sbjct 2608532 ACGTACATTGTATGGTTTCGGTGGTTAATC 2608561 >seq768 Length=1243675 Score = 134 bits (148), Expect = 2e-27 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 16459 AGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGT 16518 |||||||||||| |||||||||||||| || || || || ||||||| ||||| ||||| Sbjct 44130 AGATAACATCCACGGAATCACCAAGCCCGCAATTCGCCGCTTGGCTCGACGTGGCGGAGT 44071 Query 16519 CAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAA 16578 |||||| |||||| | |||| ||||| ||||| || ||||| |||| | | Sbjct 44070 GAAGCGTATCTCTGCGGCGATCTACGAAGAAGTTCGTAGCGTGCTGAAGTCCTTCTTGGA 44011 Query 16579 GACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTC 16638 | |||| ||| || || ||| || |||||||| || |||||||||||| | Sbjct 44010 GTCCGTGGTCCGCGACAGCGTCACCTACACGGAGCACGCGCGTCGCAAGACTGTCACCGC 43951 Query 16639 CATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| ||||||| || |||| || || || |||| ||| || || || || Sbjct 43950 AATGGACGTCGTCTACGCGCTGAAGCGCCAGGGTCGTACGATCTACGGGTTCGG 43897 >seq1101 Length=1082900 Score = 86.0 bits (94), Expect = 1e-12 Identities = 173/254 (68%), Gaps = 7/254 (3%) Strand=Plus/Plus Query 16459 AGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGT 16518 ||| |||||||| || ||||| ||||||||||| ||| | || || | | || || || Sbjct 1035998 AGACAACATCCACGGTATCACGAAGCCAGCTATTCGTAGACTTGCCAGAAGAGGAGGTGT 1036057 Query 16519 CAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA- 16577 ||| | | |||| | |||||||| | | ||| | |||| | || | Sbjct 1036058 TAAGAGAATTTCTGCCGCCATATATGAAGAAGTAAGAAGTGTGCTTC-GATCATTCTTAG 1036116 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| ||| ||| ||| | |||||| || ||||| || | ||||||||||| Sbjct 1036117 AGAATGTTGTCCGTGACGCTGTTACCTATACTGAACACGCCAAGAGAAAGACTGTCACTG 1036176 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG----- 16692 | ||||| |||| ||||| | ||||||||||| | | |||| |||||||| Sbjct 1036177 CTATGGACGTCGTTTATGCCCTTAAACGTCAAGGTAGAACACTTTACGGTTTTGGTGCTT 1036236 Query 16693 AAGTTAATCTTCTA 16706 |||||| | ||||| Sbjct 1036237 AAGTTAGTATTCTA 1036250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073991286146