Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq202 217 2e-52
seq453 214 3e-51
seq435 196 8e-46
seq768 134 2e-27
seq1101 86.0 1e-12
>seq202
Length=129526
Score = 217 bits (240), Expect = 2e-52
Identities = 209/268 (78%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || |||||||| | | |||||| ||||| |||||||| ||||| || || || ||
Sbjct 89023 GCAAAACGTCATCGTAAAGTTCTTCGTGATAATATCCAAGGTATCACAAAACCGGCCATT 88964
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||| |||||||||||||||| ||||| ||| | || |||||| |||| ||||| | |
Sbjct 88963 CGTCGATTGGCTCGTCGTGGTGGTGTCAAACGTATTTCCGGATTGATCTACGAAGAAACT 88904
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| | || | |||||| | | ||||||| ||||||| | |||||||||
Sbjct 88903 CGAGGTGTCCTTAAAGTTTTCCTCGAAAATGTTATCCGTGATGCTGTTACCTATACCGAA 88844
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| ||||||||||| ||||||||| | |||||| |||| ||||| |||||||| |||||
Sbjct 88843 CATGCTAAACGTAAAACTGTCACCGCTATGGATGTCGTTTATGCTTTGAAACGACAAGGA 88784
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700
|||| | |||||||| || ||||||
Sbjct 88783 CGTACCTTGTATGGTTTCGGCGGTTAAT 88756
Score = 156 bits (172), Expect = 7e-34
Identities = 167/218 (77%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 16484 CCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTAT 16543
|| ||||||||||| |||||||||||||||| || || || | || |||||| ||||
Sbjct 94966 CCGGCTATCCGTCGATTGGCTCGTCGTGGTGGTGTTAAACGCATTTCCGGATTGATCTAC 94907
Query 16544 GAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCA 16602
||||| | || | ||| | || | |||||| | | || || | ||||||| || ||
Sbjct 94906 GAAGAAACCCGAGGTGTCCTCAAAGTTTTCCTCGAAAATGTCATTCGTGATGCTGTTACA 94847
Query 16603 CTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662
|||||||| || ||||||||||| || |||||| | |||||| |||| ||||| |||||
Sbjct 94846 -TATACCGAACATGCTAAACGTAAAACCGTCACCGCTATGGATGTCGTTTATGCTTTGAA 94788
Query 16663 ACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700
||| ||||| |||| | |||||||| || ||||||
Sbjct 94787 ACGACAAGGACGTACCTTGTATGGTTTCGGCGGTTAAT 94750
Score = 143 bits (158), Expect = 4e-30
Identities = 144/187 (77%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||| |||||||| | | |||||| ||||| |||||||| ||||| || || || ||
Sbjct 90191 CGCTAAACGTCATCGTAAAGTTCTTCGTGATAATATCCAAGGTATCACAAAACCGGCCAT 90132
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||| |||||||||||||||| ||||| ||| | || |||||| |||| ||||| |
Sbjct 90131 TCGTCGATTGGCTCGTCGTGGTGGTGTCAAACGTATTTCCGGATTGATCTACGAAGAAAC 90072
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | ||| | || | |||||| | | ||||||| ||||||| | |||||||||
Sbjct 90071 TCGAGGTGTCCTTAAAGTTTTCCTCGAAAATGTTATCCGTGATGCTGTTACCTATACCGA 90012
Query 16612 GCACGCT 16618
|| |||
Sbjct 90011 ACATGCT 90005
>seq453
Length=90007
Score = 214 bits (236), Expect = 3e-51
Identities = 211/270 (78%), Gaps = 2/270 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||| |||||||| | | |||||| ||||| |||||||| || || || || |||||
Sbjct 12601 CGCTAAACGTCATCGTAAAGTTCTTCGTGATAATATCCAAGGTATTACAAAACCGGCTAT 12542
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||| |||||||||||||||| ||||| ||| | || || ||| |||| ||||| |
Sbjct 12541 TCGTCGATTGGCTCGTCGTGGTGGTGTCAAACGTATTTCCGGCTTGATCTACGAAGAAAC 12482
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCG 16610
||| | ||| |||| | ||||| | | ||||||| ||||||| || || |||||||
Sbjct 12481 TCGAGGTGTCCTGAAAGTTTTCCTTGAAAATGTTATCCGTGATGCTGTTACA-TATACCG 12423
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
| || ||||||||||| || |||||| | |||||| | || ||||| |||||||| ||||
Sbjct 12422 AACATGCTAAACGTAAAACAGTCACCGCTATGGATGTTGTTTATGCTTTGAAACGACAAG 12363
Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700
| |||| | ||||||||||| ||||||
Sbjct 12362 GACGTACTTTGTATGGTTTTGGCGGTTAAT 12333
>seq435
Length=2731825
Score = 196 bits (216), Expect = 8e-46
Identities = 207/270 (77%), Gaps = 2/270 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || |||||||| | | |||||| ||||| |||||||| ||||| || || |||||
Sbjct 2608293 GCCAAACGTCATCGTAAAGTTCTTCGTGATAATATCCAAGGTATCACAAAACCGGCTATT 2608352
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| |||||||||||||| ||||| ||| | || || ||| |||| ||||| |
Sbjct 2608353 CGTCGTCTTGCTCGTCGTGGTGGTGTCAAACGTATTTCCGGCTTGATCTACGAAGAAACC 2608412
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGA 16611
|| | ||| | || | |||||| | | ||||||| ||||||| || || ||||| ||
Sbjct 2608413 CGAGGTGTACTCAAAGTTTTCCTCGAAAATGTTATCCGTGATGCTGTTACA-TATACTGA 2608471
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| || |||||||| || || ||| |||||||| | || |||||| | ||||| |||||
Sbjct 2608472 ACATGCAAAACGTAAAACCGTAACCGCCATGGATGTTGTTTATGCACTCAAACGACAAGG 2608531
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATC 16701
|||| | |||||||| || |||||||
Sbjct 2608532 ACGTACATTGTATGGTTTCGGTGGTTAATC 2608561
>seq768
Length=1243675
Score = 134 bits (148), Expect = 2e-27
Identities = 170/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 16459 AGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGT 16518
|||||||||||| |||||||||||||| || || || || ||||||| ||||| |||||
Sbjct 44130 AGATAACATCCACGGAATCACCAAGCCCGCAATTCGCCGCTTGGCTCGACGTGGCGGAGT 44071
Query 16519 CAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAA 16578
|||||| |||||| | |||| ||||| ||||| || ||||| |||| | |
Sbjct 44070 GAAGCGTATCTCTGCGGCGATCTACGAAGAAGTTCGTAGCGTGCTGAAGTCCTTCTTGGA 44011
Query 16579 GACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTC 16638
| |||| ||| || || ||| || |||||||| || |||||||||||| |
Sbjct 44010 GTCCGTGGTCCGCGACAGCGTCACCTACACGGAGCACGCGCGTCGCAAGACTGTCACCGC 43951
Query 16639 CATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
||||| ||||||| || |||| || || || |||| ||| || || || ||
Sbjct 43950 AATGGACGTCGTCTACGCGCTGAAGCGCCAGGGTCGTACGATCTACGGGTTCGG 43897
>seq1101
Length=1082900
Score = 86.0 bits (94), Expect = 1e-12
Identities = 173/254 (68%), Gaps = 7/254 (3%)
Strand=Plus/Plus
Query 16459 AGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGT 16518
||| |||||||| || ||||| ||||||||||| ||| | || || | | || || ||
Sbjct 1035998 AGACAACATCCACGGTATCACGAAGCCAGCTATTCGTAGACTTGCCAGAAGAGGAGGTGT 1036057
Query 16519 CAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA- 16577
||| | | |||| | |||||||| | | ||| | |||| | || |
Sbjct 1036058 TAAGAGAATTTCTGCCGCCATATATGAAGAAGTAAGAAGTGTGCTTC-GATCATTCTTAG 1036116
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||| ||| ||| ||| | |||||| || ||||| || | |||||||||||
Sbjct 1036117 AGAATGTTGTCCGTGACGCTGTTACCTATACTGAACACGCCAAGAGAAAGACTGTCACTG 1036176
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG----- 16692
| ||||| |||| ||||| | ||||||||||| | | |||| ||||||||
Sbjct 1036177 CTATGGACGTCGTTTATGCCCTTAAACGTCAAGGTAGAACACTTTACGGTTTTGGTGCTT 1036236
Query 16693 AAGTTAATCTTCTA 16706
|||||| | |||||
Sbjct 1036237 AAGTTAGTATTCTA 1036250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79073991286146
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |