Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1 367 1e-96 seq990 100 3e-16 >seq1 Length=3593316 Score = 367 bits (406), Expect = 1e-96 Identities = 657/945 (70%), Gaps = 24/945 (3%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAA-ACATTATCTTCtttttttGACATAATTCCCATTT 21185 ||||||||||||||| | | ||| || | |||||| | |||||| | || ||| Sbjct 930175 TTAAAAATCAGCATCGG-TAACAAATACCTGATCTTCAGGTCGTGACATGACACCACTTT 930117 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||||| || ||| | |||||| |||||||||| || ||||| |||||||| || Sbjct 930116 TTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCTTCTAATGATATTTGTT 930057 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTA-AATATTTTATTACAACCCAGTTCTGATAAT 21304 |||||||||||||||||||| | |||| ||| |||| | |||| | | ||| ||| Sbjct 930056 CCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTT-TCACAATCTAATTCAACCAAT 929998 Query 21305 AATCTATCTGCTACAA-ATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 || | ||| || |||| |||| ||||| | ||||||||| | ||||||||||||||| Sbjct 929997 AAACGATCGGC-ACAATATTCAATATAATCGGACATTAATTTAGCATTCATACCGATCAA 929939 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423 | ||| || | || | || | ||| || ||| ||| || || |||| ||| || Sbjct 929938 TGATACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACAGCATCAATAATAAT 929879 Query 21424 ATTTATTATCCTAGATGTACTAGGGG--GAT-AC-AATAATTGTTTAAACATCAAACATG 21479 | | || | | ||| | || ||| || |||| || | ||||| | ||| | Sbjct 929878 TTCAACAATTC--GTTGTGATGATGGACGATTACGAATA--TGATGAAACAAAAGACAGG 929823 Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539 ||||||||||||| || |||||||| | || |||||||| ||||| || | ||| | Sbjct 929822 CAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAAAAGGTAAGACCAG 929763 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGC 21599 |||||| || | ||||||| |||||| |||| ||||||| || ||||| || || | Sbjct 929762 GCATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCGGAAAAAAATATTC 929703 Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTA---GATTCTTTATCCAATA 21656 | ||||| ||||||||||||| ||| ||||| | ||||| || || ||| | Sbjct 929702 CTTCAACAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGAATC---ATCTTGTG 929646 Query 21657 TCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTA 21716 |||| | |||||||| || |||| | | |||| | || ||||| || | Sbjct 929645 TCCAACGTATAGCCCATTTAGCTTTTTTCTCTACACAAGGTAGATTACGTATAGCATTGA 929586 Query 21717 AAAGATGAtttttttCATCTAC-ATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATT 21775 | ||| || || ||||| ||| ||| | || ||||||| Sbjct 929585 ATAGAAAATCTTGTTCAT-TACGATCCGATACATAGGTATTAATCAATAATGAATACATT 929527 Query 21776 TCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT 21835 || ||||| | |||||| || || || |||||||| |||||||| | ||| |||| | Sbjct 929526 TCTGAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTGCTTCTGGTATT 929467 Query 21836 TGAACCTCG-GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGC 21894 || || || |||||||| |||| ||| || |||||||| || || |||||||| || || Sbjct 929466 TGTACATCACGAATAAAA-CGTTCAGCTAAATTTTCATTAACAATACCATCACTTGCAGC 929408 Query 21895 AAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATC 21954 |||||| ||||||| || | || |||| | ||| || ||||||| ||||||| Sbjct 929407 AAAAAAAGCCAATACATGTGAAATGAAATGTTTTTCATTCGAATTTAATTTATTCCAATG 929348 Query 21955 TAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTT 22014 || | ||| | || ||||||||||||| ||||||||| || ||| ||||| Sbjct 929347 TACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATGCTTCAGCTTTTTT 929288 Query 22015 ATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 ||||| |||| ||||||| |||| |||||||| | ||||| Sbjct 929287 GTACATTGTCCAAATATCATGATATTGAATTGGAAACAAAACAAA 929243 >seq990 Length=1130841 Score = 100 bits (110), Expect = 3e-16 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247 || || ||||| ||||||||||| ||||| ||||| ||||||| | ||| || | ||| Sbjct 1099673 TGGTAGTCACTGACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTGGATTGAAATCAACTCC 1099614 Query 21248 ATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAAT 21307 || | || ||||||||||| || || ||| ||| | ||||| ||| ||| | | Sbjct 1099613 ATCCAGGAGAACGGATTTTCAGAGTTGAAAATTGAGTTATATCCCAGATCTTTTAAAAGT 1099554 Query 21308 CTATCTGCT-ACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 ||||| ||| ||| |||| | ||||||| ||||| || ||||||| || || || Sbjct 1099553 CTATC-GCTGACATATTCGAGATATTGAATCATTAGTTTTGAATTCATTCCAATTAA 1099498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531892010339280