Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq1 367 1e-96
seq990 100 3e-16
>seq1
Length=3593316
Score = 367 bits (406), Expect = 1e-96
Identities = 657/945 (70%), Gaps = 24/945 (3%)
Strand=Plus/Minus
Query 21127 TTAAAAATCAGCATCTAATGAGAAA-ACATTATCTTCtttttttGACATAATTCCCATTT 21185
||||||||||||||| | | ||| || | |||||| | |||||| | || |||
Sbjct 930175 TTAAAAATCAGCATCGG-TAACAAATACCTGATCTTCAGGTCGTGACATGACACCACTTT 930117
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
||||||| || ||| | |||||| |||||||||| || ||||| |||||||| ||
Sbjct 930116 TTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCTTCTAATGATATTTGTT 930057
Query 21246 CCATAAAATCAAATGGATTTTCAGATTTA-AATATTTTATTACAACCCAGTTCTGATAAT 21304
|||||||||||||||||||| | |||| ||| |||| | |||| | | ||| |||
Sbjct 930056 CCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTT-TCACAATCTAATTCAACCAAT 929998
Query 21305 AATCTATCTGCTACAA-ATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363
|| | ||| || |||| |||| ||||| | ||||||||| | |||||||||||||||
Sbjct 929997 AAACGATCGGC-ACAATATTCAATATAATCGGACATTAATTTAGCATTCATACCGATCAA 929939
Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423
| ||| || | || | || | ||| || ||| ||| || || |||| ||| ||
Sbjct 929938 TGATACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACAGCATCAATAATAAT 929879
Query 21424 ATTTATTATCCTAGATGTACTAGGGG--GAT-AC-AATAATTGTTTAAACATCAAACATG 21479
| | || | | ||| | || ||| || |||| || | ||||| | ||| |
Sbjct 929878 TTCAACAATTC--GTTGTGATGATGGACGATTACGAATA--TGATGAAACAAAAGACAGG 929823
Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539
||||||||||||| || |||||||| | || |||||||| ||||| || | ||| |
Sbjct 929822 CAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAAAAGGTAAGACCAG 929763
Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGC 21599
|||||| || | ||||||| |||||| |||| ||||||| || ||||| || || |
Sbjct 929762 GCATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCGGAAAAAAATATTC 929703
Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTA---GATTCTTTATCCAATA 21656
| ||||| ||||||||||||| ||| ||||| | ||||| || || ||| |
Sbjct 929702 CTTCAACAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGAATC---ATCTTGTG 929646
Query 21657 TCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTA 21716
|||| | |||||||| || |||| | | |||| | || ||||| || |
Sbjct 929645 TCCAACGTATAGCCCATTTAGCTTTTTTCTCTACACAAGGTAGATTACGTATAGCATTGA 929586
Query 21717 AAAGATGAtttttttCATCTAC-ATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATT 21775
| ||| || || ||||| ||| ||| | || |||||||
Sbjct 929585 ATAGAAAATCTTGTTCAT-TACGATCCGATACATAGGTATTAATCAATAATGAATACATT 929527
Query 21776 TCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT 21835
|| ||||| | |||||| || || || |||||||| |||||||| | ||| |||| |
Sbjct 929526 TCTGAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTGCTTCTGGTATT 929467
Query 21836 TGAACCTCG-GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGC 21894
|| || || |||||||| |||| ||| || |||||||| || || |||||||| || ||
Sbjct 929466 TGTACATCACGAATAAAA-CGTTCAGCTAAATTTTCATTAACAATACCATCACTTGCAGC 929408
Query 21895 AAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATC 21954
|||||| ||||||| || | || |||| | ||| || ||||||| |||||||
Sbjct 929407 AAAAAAAGCCAATACATGTGAAATGAAATGTTTTTCATTCGAATTTAATTTATTCCAATG 929348
Query 21955 TAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTT 22014
|| | ||| | || ||||||||||||| ||||||||| || ||| |||||
Sbjct 929347 TACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATGCTTCAGCTTTTTT 929288
Query 22015 ATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059
||||| |||| ||||||| |||| |||||||| | |||||
Sbjct 929287 GTACATTGTCCAAATATCATGATATTGAATTGGAAACAAAACAAA 929243
>seq990
Length=1130841
Score = 100 bits (110), Expect = 3e-16
Identities = 130/177 (73%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247
|| || ||||| ||||||||||| ||||| ||||| ||||||| | ||| || | |||
Sbjct 1099673 TGGTAGTCACTGACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTGGATTGAAATCAACTCC 1099614
Query 21248 ATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAAT 21307
|| | || ||||||||||| || || ||| ||| | ||||| ||| ||| | |
Sbjct 1099613 ATCCAGGAGAACGGATTTTCAGAGTTGAAAATTGAGTTATATCCCAGATCTTTTAAAAGT 1099554
Query 21308 CTATCTGCT-ACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363
||||| ||| ||| |||| | ||||||| ||||| || ||||||| || || ||
Sbjct 1099553 CTATC-GCTGACATATTCGAGATATTGAATCATTAGTTTTGAATTCATTCCAATTAA 1099498
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531892010339280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |