Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq391 125 6e-24 seq1 113 4e-20 seq569 89.7 4e-13 >seq391 Length=841353 Score = 125 bits (138), Expect = 6e-24 Identities = 175/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||||||||| || || |||||| ||| | ||||||| ||| | ||| Sbjct 251160 ATGCAAATTTTTGTAAAAACTTTGACAGGAAAAAATATTTCTCTCGAAGTAGAGCCAAAC 251101 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || || ||| || ||| || |||||||| || || || |||||| Sbjct 251100 GATACCATTGAAAGCGTGAAAACGAAAATTCAGGATAAAGAAGGGATTCCGCCTGATCAA 251041 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGA-AACGTCAGCGATTATA 24168 ||| | | |||| | || |||||||| || || | | || | |||| ||||| | Sbjct 251040 CAGCGGTTAATTTTTGCTGGAAAGCAACTTGACGATTCGCGGACATTGTCA--GATTACA 250983 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAATGAT 24228 |||||||||| ||||| || | ||| | ||||| | |||||||||||| | |||| || Sbjct 250982 ACATTCAAAAGGAATCAACTTTGCATCTGGTGTTGCGGTTGAGAGGAGGATTTTAATTAT 250923 Query 24229 TC 24230 || Sbjct 250922 TC 250921 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||||||||| || || |||||| | || || || | || Sbjct 731052 ATGCAGATTTTCGTGAAAACATTAACAGGGAAGAACATTACCCTGGAGGTGGAACCAAAT 730993 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| ||||| || || ||||||||||| || || || ||||| Sbjct 730992 GACACTATTGAGTCCATCAAAACCAAAATCCAAGACAAAGAAGGAATTCCCCCGGATCAG 730933 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| |||| | || |||||||| || || || | | | ||| || ||| Sbjct 730932 CAAAGACTTATTTTTGCTGGTAAGCAACTAGACGACAACCGCACTTTATCCGACTACAAC 730873 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || |||||||| ||||||||||||||| | | | |||||||| Sbjct 730872 ATCCAGAAAGAATCCACAATTCATTTAGTGCTTCGTCTTAGAGGAGG 730826 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 || ||| | |||||||| || ||||| |||||| || | | |||||||| ||||| Sbjct 251388 ATACAAATTTTTGTAAAGACCTTAACAGGAAAAAATATATCTTTGGAAGTCGAACCCAAC 251329 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| || || || ||| ||||||||||| || || || || ||| Sbjct 251328 GACACTATTGAGAGTGTAAAGATGAAAATTCAGGACAAAGAAGGGATTCCGCCAGACCAA 251269 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA--ACGTCAGCGATTATA 24168 ||| || | |||| | || || || | |||||| |||| |||| || || | Sbjct 251268 CAGCGATTAATTTTTGCTGGAAAACAGTTAGAAGATTCTAGAACTTTGTCA--GACTACA 251211 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | || || |||||||| ||| | || |||||| | || | ||||| || Sbjct 251210 ATATCCAGAAAGAATCCACATTACACTTAGTGCTTCGACTTAGAGGTGG 251162 >seq1 Length=3593316 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || ||||||||||| || || ||| | || ||| | ||||| || ||| Sbjct 1031827 AATGCAAATTTTCGTAAAAACATTGACCGGTAAAACCATCACCTTGGAAGTGGAA-CCAT 1031769 Query 24050 CG-ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 || | || ||||| | |||||| ||| || ||||||||||| || || || |||| Sbjct 1031768 CGGATACTATCGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGTATTCCACCAGATC 1031709 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 | ||| | |||| | | ||| || ||| | ||||||| ||| | |||||||| Sbjct 1031708 AGCAGCGTTTGATCTTTGCCGGAAAACAATTGGAAGATGGTCGAACATTGTCCGATTATA 1031649 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| ||||||||||| ||| | ||||| || || Sbjct 1031648 ACATCCAAAAAGAATCGACATTACATTTGGTATT 1031615 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || ||||||||||| ||||| ||| | || || | |||||||| ||| | Sbjct 1033481 ATGCAAATCTTCGTAAAAACATTGACTGGTAAAACCATCACTTTGGAAGTCGAA-CCATC 1033423 Query 24051 G-ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 | |||||||||| | || ||| || ||| || ||||||||||| || || ||||| Sbjct 1033422 GGACACCATCGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGCATTCCACCAGATCA 1033363 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || || |||| | | || || ||| | ||||||| | | | ||||||||| Sbjct 1033362 GCAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGTCCGATTATAA 1033303 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||| ||||| ||| | ||||| || || Sbjct 1033302 TATTCAAAAGGAATCAACATTGCATTTGGTATT 1033270 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || |||||||| || ||||| ||| | ||||| | |||||||| ||| | Sbjct 1033253 ATGCAAATTTTCGTAAAAACTTTGACTGGCAAAACCATTACTTTGGAAGTCGAA-CCATC 1033195 Query 24051 G-ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 | |||| ||||| | || ||| || || || |||||||| || || || ||||| Sbjct 1033194 GGACACTATCGAAAATGTGAAAGCTAAAATCCAGGATAAAGAAGGTATTCCACCAGATCA 1033135 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || || |||| | | || || ||||||||||||| | ||| | |||||||| Sbjct 1033134 GCAACGATTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGAACATTGTCGGATTATAA 1033075 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || ||||||||||| || | ||||| || || Sbjct 1033074 TATACAAAAAGAATCCACCTTACATTTGGTATT 1033042 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || || ||| | ||||| | ||||||||| ||| | Sbjct 1032282 ATGCAAATTTTCGTCAAAACTCTTACCGGTAAAACTATTACATTGGAAGTCGAG-CCATC 1032224 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || ||||| | || ||| || || |||||||| || || || || ||||| Sbjct 1032223 TGATACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCA 1032164 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || || |||| | | ||| |||||| | ||||||| |||| | |||||| || Sbjct 1032163 GCAACGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGAAGAACTTTGTCCGATTACAA 1032104 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 ||||||||| ||||| ||| | ||||| || ||| Sbjct 1032103 CATTCAAAAGGAATCGACATTGCATTTGGTTTTA 1032070 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || ||||| ||| | ||||| | ||||| || || Sbjct 1032738 ATGCAGATTTTTGTCAAAACTTTGACTGGTAAAACCATTACATTGGAAGTGGAACCCTCG 1032679 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | ||||| || || ||||||||||| || || || || || Sbjct 1032678 GATACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGACCAG 1032619 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||||| || ||||| || || ||||||| | ||| | ||||| ||| Sbjct 1032618 CAACGTTTGATTTTCGCTGGCAAACAGCTTGAAGATGGCCGAACATTGTCGGATTACAAC 1032559 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATT 24208 |||||||||||||| ||| ||||| | || || |||| Sbjct 1032558 ATTCAAAAAGAATCGACACTTCATCTCGTATTGCGATT 1032521 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || ||||||| ||| |||| || | ||||||||| ||| | Sbjct 1032054 ATGCAAATTTTCGTCAAGACCCTAACTGGTAAAACGATCACTTTGGAAGTCGAG-CCATC 1031996 Query 24051 G-ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 | | || ||||| | || ||| |||||| || || ||||| || || || ||||| Sbjct 1031995 GGATACAATCGAAAATGTAAAAGCCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCA 1031936 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | |||||| || || || ||| | ||||||| | | | | | |||||| || Sbjct 1031935 GCAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGCCGTACCTTATCCGATTACAA 1031876 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||||||||| || | ||||| ||| Sbjct 1031875 TATTCAAAAAGAATCCACCTTACATTTGGTG 1031845 >seq569 Length=351751 Score = 89.7 bits (98), Expect = 4e-13 Identities = 183/266 (69%), Gaps = 7/266 (3%) Strand=Plus/Minus Query 133008 TTTCGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAG 133067 |||| |||||| | ||||||||||| || | || || | | ||| ||||| || | | Sbjct 123786 TTTCATATAATTGTTCAAATTCTTCACCCCAACAATCATGTAGACCAGGACATTCATTCG 123727 Query 133068 GACACATCAATGACCATTTTTC-TCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTC 133126 ||||||| |||||||| || | ||| | || | |||||| || || ||| || Sbjct 123726 GACACATTAATGACCACATTGCATCCATTTC-AACACGTTTCATAAATAAATCCGGTATC 123668 Query 133127 CACATGGCAAAAAATAAATCGCGAGC-CTTCATATCTTCCGCGCCCATATTTCGTTTCAA 133185 || | ||| | |||| ||| || || | | || ||||||| || |||| |||||| Sbjct 123667 CATAATGCATAGAATAGATCACGTGCACGTAAT-TCTTCCGAACCAGTATTCTTTTTCAA 123609 Query 133186 GTCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTT 133245 || ||||| | ||| || |||| |||||| || || | ||| | || || || ||| Sbjct 123608 ATCTAAAAATGCAAATATATCTGAATGCCATGGTTCTAGATAGATAGCAAATGCACCTGG 123549 Query 133246 CCTTTT---ACCTCCCTGATCCACAT 133268 | ||| ||| || ||||| |||| Sbjct 123548 ACGTTTTCCACCACCTTGATCAACAT 123523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429929072924910