Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 seq335 111 1e-19 seq391 104 2e-17 seq768 100 3e-16 seq558 98.7 9e-16 >seq1 Length=3593316 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || || |||| || | ||| | ||||| || ||||||||||||||||| | Sbjct 1032512 CCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGAC 1032571 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || ||||| ||||| ||| | || ||||| |||||||| || || Sbjct 1032572 AATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGA 1032631 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||||||||| |||||| ||||| | || | ||||| | || || | Sbjct 1032632 ATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCACT 1032691 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||||||| || | |||||| || ||||||||||| Sbjct 1032692 TCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||| || ||||||| ||||| || ||||| ||||| |||||| | Sbjct 1031600 CCACCACGAAGTCGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCGGAC 1031659 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || || |||| ||||||||||| || || || Sbjct 1031660 AATGTTCGACCATCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTGGA 1031719 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| |||||| ||| |||| | || | |||||| | | || | Sbjct 1031720 ATACCTTCTTTGTCTTGGATTTT-TGCTTTGACATTTTCGATAGTATCCGATGGTTCCAC 1031778 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||||||||| | |||||||||||||| ||||| Sbjct 1031779 TTCCAAGGTGATGGTTTTACCGGTCAATGTTTTTACGAAAATTTGCAT 1031826 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| | || ||||| | ||||| ||||||||||||||||||||| | Sbjct 1032056 CCACCACGGAGACGTAAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGGAC 1032115 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | || || | ||||| || || |||| || || ||||| || || || Sbjct 1032116 AAAGTTCTTCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGGGA 1032175 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| |||||||| |||||| || | | || | ||||| | | ||||| Sbjct 1032176 ATTCCCTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTATCAGATGGCTCGACT 1032235 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||||||||| |||||||| |||||||| ||||| Sbjct 1032236 TCCAATGTAATAGTTTTACCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAAT-CGCT 131066 ||||| || | ||||| || ||||| | || ||||| ||||| |||||||||| || | Sbjct 1032284 CCACCACGTAGACGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCGAT 1032343 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || |||| || || || || |||| ||||| |||||||| || || Sbjct 1032344 AAT-GTACGACCATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTGG 1032402 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||||| ||||| || ||| ||| || ||| | | || | ||||| | | || | Sbjct 1032403 AATTCCCTCTTTATC-CTGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCAA 1032461 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | || | ||||||||| || | ||||| |||||||| ||||| Sbjct 1032462 CGTCTAATGTGATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || ||||||| || ||||||| ||| || || ||||| || || ||||| | Sbjct 1033027 CCACCACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGAC 1033086 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || || || || |||| || || ||||| || || || Sbjct 1033087 AATGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGA 1033146 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || |||||| || | | || | ||| || | | |||| Sbjct 1033147 ATACCTTCTTTATCCTGGATTTTAGCTTTCACATTTTCGATAGTGTCCGATGGTTCGACT 1033206 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| || || | ||||||||||||||| ||||| Sbjct 1033207 TCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253 >seq335 Length=939964 Score = 111 bits (122), Expect = 1e-19 Identities = 602/939 (64%), Gaps = 25/939 (3%) Strand=Plus/Minus Query 145254 CGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGT 145313 ||| ||||| |||| |||| || |||| ||||| ||||| ||||| ||| || Sbjct 179929 CGTTCCACAAGTCGAACTGGAATTTGCCTTCGCTCGCGGGCGAGCCTTCGAAGCTCGCGT 179870 Query 145314 AACTGCCCCAAGTT-TTGGCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTC 145372 | | |||| | || ||||||||| ||||| || |||||||| || || ||| Sbjct 179869 A-CGGCCCGTGCTCCTTCGCGAGCTCGACGCTCGCGGTCACCGCGCCGAAGTAGATCGTC 179811 Query 145373 TCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGT 145432 ||| || | | |||| | |||| || ||| ||| |||||| |||||||| Sbjct 179810 TCGAAGATGTTCTTGTTCACTTCGTTCGCCTCGGGGCTGTCGAACGGCAGCCGCAGCAGC 179751 Query 145433 ACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTC 145492 | || || |||| || || | || | |||||| ||||| || || |||||| Sbjct 179750 TGCAGCGCGTCCGCGAAGCCTTGCACGCCGATGCCGATCGGCCGGTGCCGCAGGTTGCTG 179691 Query 145493 ATCCTCGCCGACTCGATAGGATATC-GATTACGGTCGATAATTTTATTCAAGTTTCGCAC 145551 || |||| |||| | || | ||| ||||| | || |||| ||| || Sbjct 179690 CGCCGCGCCTTCTCGGTCACGTAGAAGCCCACG-TCGATCACGTTGTTCAGGTTCTGCGT 179632 Query 145552 TACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCAC 145611 || | ||| | | | || ||| || ||| || || || || ||| |||| Sbjct 179631 CACGATCTTCGCGACCTCGAACAGCTTCTCGTAGTTGAAGCGCCGCTTCTCGACGTCCAC 179572 Query 145612 ACA-GCTATTGACGGCGAT--CGACGCCAAATTACAAACTGCCGTCTCCTCG-GCGTCGC 145667 | || | | |||| |||||| | || || || || |||||||| ||| || Sbjct 179571 GTACGCG---GGCAGCGACAGCGACGCGAGGTTGCACACCGCGATCTCCTCGCGCGACG- 179516 Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| || || | || | ||||| || | | |||||| || || || |||| | Sbjct 179515 TGTACTGCACCACTTCCGTGCACAGGTTCGAGGACTGGATGGTGCCGAGGTTCCGCTGGT 179456 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || | |||||||||||||||||| | || |||||| ||| ||||| | ||||| Sbjct 179455 TCGACTTGCGGTTGCACGCGTCCTTGTACACCAAGTACGGATTGCCCGTCTCGATCTGCG 179396 Query 145788 TCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTC 145845 | | ||| || || || || || | |||| ||||||| || | |||| ||| Sbjct 179395 TGTTCACAAT--GACCGTCCAGAGCGCGCGCGCCTTCACCTGCCGCACGAAGCGCTGCTC 179338 Query 145846 TTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGG 145905 | ||||| | |||| ||| | || ||| | | || || ||| ||| ||| || Sbjct 179337 GGCCTCGTAGCGCGTGTACAGCGCGTCGAACTCCGCGCCCCAGACTTCGAACAAGCCCGG 179278 Query 145906 ACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAA 145965 ||| |||||||||||| ||| ||||||| ||| ||||| ||| ||||| Sbjct 179277 CGACTGCGCGGGACACATCAGACTCCACACGCCGTCTTCGTCCACGCGGCGCATGAACAA 179218 Query 145966 ATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAA-TCCTCAGCACCCATGT 146024 || | ||||| | | | ||| |||| | |||| || || || || Sbjct 179217 GTCGTTGATGTACAGCCCCAGGAAGAGGTCCCGCG-TGCGCAACTCTTCGTTGCCGTGGT 179159 Query 146025 TTCGCTTCAAAT-TAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCG 146083 | ||| || | | | || | | ||||||| ||||||||||| || | |||| ||| Sbjct 179158 TGCGCCGCAGCTCGATGAACTCGA-AGATGTCTGCGTGCCACGGCTCCAGGTAGATCGCG 179100 Query 146084 AGGGCTCCTTTTCGTTT---GCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACG 146140 | | | ||||| || || ||| |||||||| |||| || | | ||| || ||| Sbjct 179099 AAGCCGCCTTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCGGTCGCGTTGAACACG 179040 Query 146141 CGCACCATGGGCTCGACGCCGCTGGCTACG-CCGTTCGT 146178 |||| ||| ||| ||| ||| | ||| || |||||||| Sbjct 179039 CGCAGCATCGGCACGATCCCG-TTGCTGCGCCCGTTCGT 179002 >seq391 Length=841353 Score = 104 bits (114), Expect = 2e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| ||||||||||| || || || || || || |||||||| ||| | ||||| Sbjct 730837 ACGAAGCACTAAATGAATTGTGGATTCTTTCTGGATGTTGTAGTCGGATAAAGTGCGGTT 730896 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||| ||||| ||||| || || | || | | ||||| ||||| || ||||||||||| Sbjct 730897 GTCGTCTAGTTGCTTACCAGCAAAAATAAGTCTTTGCTGATCCGGGGGAATTCCTTCTTT 730956 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| |||||| |||| ||| | ||| || | | || | || | ||||| Sbjct 730957 GTCTTGGATTTTGGTTTTGATGGACTCAATAGTGTCATTTGGTTCCACCTCCAGGGTAAT 731016 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 | | || || |||| ||||| |||||||||||||| ||| Sbjct 731017 GTTCTTCCCTGTTAATGTTTTCACGAAAATCTGCATCACT 731056 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | ||| |||| ||| | ||| | || || |||||||||||||||||||| | Sbjct 250934 CCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGAC 250993 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||||| || || || ||||| || || | ||||| ||||| || || || || Sbjct 250994 AATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGGA 251053 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGA-GCTGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || |||||| || | ||| || | |||||| | | ||| | Sbjct 251054 ATCCCTTCTTTATCCTGAATTTTCGTTTTCACGCT-TTCAATGGTATCGTTTGGCTCTAC 251112 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| | || |||| || || | ||||||||| ||||| ||||| Sbjct 251113 TTCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 >seq768 Length=1243675 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| |||||||| || || || |||||||||||||| |||||||| || Sbjct 1130695 GCCGCCACGCAGCCGCAGCACCAAGTGGATCGTCGACTCCTTTTGGATGTTGTAGTCCGC 1130754 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||| || | |||||| || || | || | ||||||||||||||| || Sbjct 1130755 GAGCGTGCGCCCGTCATCCAACTGCTTCCCGGCAAAAATCAGACGCTGCTGGTCCGGCGG 1130814 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGA-GCTGCTCCACAGTATCGGTGGACTCGA 131185 || || || ||||| ||| || |||| ||| ||| | || ||| | | || | Sbjct 1130815 AATGCCCTCCTTGTCCTGGATCTTAGCTTTGACGCT-CTCGATCGTGTCGTTTGGGTCCA 1130873 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | | | || || || || || || ||||| || ||||| Sbjct 1130874 CCTCAAGGGTGATGTTCTTCCCCGTGAGCGTCTTCACGAAGATTTGCAT 1130922 >seq558 Length=611125 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| ||||| || || || || || ||||| || ||||||||||| || Sbjct 303940 CCGCCGCGCAGTCGCAGTACCAAGTGAATAGTGGACTCTTTCTGAATGTTGTAGTCCGCG 303881 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || |||||||| || || |||| || |||||||||||||| || Sbjct 303880 AGCGTGCGTCCGTCGTCGAGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCGGA 303821 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGA-GCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || |||||||| ||| || |||| ||| ||| | || ||| | | || | Sbjct 303820 ATGCCCTCTTTGTCCTGGATCTTAGCTTTGACGCT-CTCGATCGTGTCGTTTGGGTCCAC 303762 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | | | || || || || || || || || |||||||| Sbjct 303761 TTCGAGCGTTATGTTCTTGCCCGTGAGTGTCTTGACAAATATCTGCAT 303714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472004999988480