Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1 152 3e-32 seq657 136 3e-27 seq658 111 1e-19 seq471 109 4e-19 seq380 109 4e-19 seq391 107 1e-18 >seq1 Length=3593316 Score = 152 bits (168), Expect = 3e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| |||||||| | ||| ||| ||||| || |||||||| | Sbjct 1032282 TACCACCACGTAGACGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCG 1032341 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || ||| | || ||||||||||| |||||||| || | ||||| || || | | Sbjct 1032342 ATAATGTACGACCATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTG 1032401 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || ||||| ||| ||||||| ||||||||| | || ||||| ||||| Sbjct 1032402 GAATTCCCTCTTTATCCTGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCAA 1032461 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | |||||||| || |||||||| ||||| ||||||||||| || ||||| Sbjct 1032462 CGTCTAATGTGATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| || |||||||| | || ||||||||||| |||||||| | Sbjct 1032054 TACCACCACGGAGACGTAAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGG 1032113 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| | | | || || ||||| ||||||||||| || | ||||| ||||| | || Sbjct 1032114 ACAAAGTTCTTCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGG 1032173 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || ||||||||| ||||| || ||||| | || ||||| || | Sbjct 1032174 GAATTCCCTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTATCAGATGGCTCGA 1032233 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| ||||||||||||||||| || | ||||| ||||| || ||||| Sbjct 1032234 CTTCCAATGTAATAGTTTTACCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282 Score = 127 bits (140), Expect = 1e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | |||||| |||||||| | || |||||||||||||| ||||| | Sbjct 1033253 TACCGCCACGTAGACGCAATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCGG 1033312 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| ||| | || || |||||||| || ||||| || | ||||| ||||| | | Sbjct 1033313 ACAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTG 1033372 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||| || |||||| || ||||| | || || || ||| | Sbjct 1033373 GAATGCCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCGATGGTGTCCGATGGTTCGA 1033432 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 |||| || || || |||||||| ||||| ||||| ||||| || |||||| || Sbjct 1033433 CTTCCAAAGTGATGGTTTTACCAGTCAATGTTTTTACGAAGATTTGCATGATT 1033485 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 ||||| |||||||| | || || ||||| || || ||||| ||||| || | Sbjct 1031612 CGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCGGACAATGTTCGACCA 1031671 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || ||||||||||||||||| || | || || ||||| | || | ||||||||| Sbjct 1031672 TCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTTTG 1031731 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 || |||||| || ||||| | || |||||| ||| ||||| || || || Sbjct 1031732 TCTTGGATTTTTGCTTTGACATTTTCGATAGTATCCGATGGTTCCACTTCCAAGGTGATG 1031791 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| ||||| ||||| ||||| || ||||| Sbjct 1031792 GTTTTACCGGTCAATGTTTTTACGAAAATTTGCAT 1031826 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||||| || | |||||| || || |||||||| |||||||| | Sbjct 1032510 TACCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCG 1032569 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || | ||||| || || || || | ||||| || || | | Sbjct 1032570 ACAATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTG 1032629 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| ||||| ||| ||||| | | ||||| ||| | Sbjct 1032630 GAATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCA 1032689 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| |||||||| |||||||| ||||| ||||| || || |||||||| Sbjct 1032690 CTTCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | ||||||||| | ||| || |||||||||||||||| Sbjct 1031824 CATT-CCACCACGGAGACGAAGCACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAAT 1031882 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || || ||| | || || |||||||| || || || || | ||||| ||||| | Sbjct 1031883 CGGATAAGGTACGGCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTG 1031942 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||| || || ||| || || ||||| | || ||||| | Sbjct 1031943 GTGGAATACCTTCCTTATCTTGAATCTTGGCTTTTACATTTTCGATTGTATCCGATGGCT 1032002 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || || || |||||||| || | ||| || ||||| || ||||| Sbjct 1032003 CGACTTCCAAAGTGATCGTTTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 1032054 >seq657 Length=2482312 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 7123 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 7064 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 7063 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7029 Score = 111 bits (122), Expect = 1e-19 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| Sbjct 3961 CTCTCTCTTCAAAGTGCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGC 3902 Query 20007 GGTAATATTTAGCCTT 20022 || |||||||| ||| Sbjct 3901 TGTGATATTTAGTCTT 3886 >seq658 Length=722326 Score = 111 bits (122), Expect = 1e-19 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| Sbjct 203714 CTCTCTCTTCAAAGTGCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGC 203773 Query 20007 GGTAATATTTAGCCTT 20022 || |||||||| ||| Sbjct 203774 TGTGATATTTAGTCTT 203789 >seq471 Length=29810 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||| |||| | ||| | |||||||| Sbjct 20289 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGTTGGGGACAGTAGGAATCTCGT 20230 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||||||| |||||||| ||||| Sbjct 20229 TGATCCATTCATGCGCGTCATTAATTAGACGACGA 20195 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 ||||||||||||||||||||||||||||||||| | || | ||| | |||||||| Sbjct 26690 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGCAGTTGGGGACAGTAGGAATCTCGT 26631 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||| |||||||| ||||| Sbjct 26630 TAATCCATTCATGCGCGTCATTAATTAGACGACGA 26596 Score = 86.0 bits (94), Expect = 4e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||| ||| |||| |||||||||||||| |||| |||||||||||||||||||||| Sbjct 29408 CTCTCCTTTCGAAGTGCTTTTCAACTTTCCTTCACAGTACTTGTTCGCTATCGGTCTCTT 29349 Query 20007 GGTAATATTTAG 20018 ||| ||||||| Sbjct 29348 AGTAGTATTTAG 29337 >seq380 Length=884649 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||| |||| | ||| | |||||||| Sbjct 20627 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGTTGGGGACAGTAGGAATCTCGT 20568 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||||||| |||||||| ||||| Sbjct 20567 TGATCCATTCATGCGCGTCATTAATTAGACGACGA 20533 >seq391 Length=841353 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||||||| |||||||||| ||| | ||| ||||||||||| |||||||| ||| Sbjct 250934 CCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGAC 250993 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || ||||| | ||| ||||| ||||| |||| || |||||||| | || Sbjct 250994 AATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGGA 251053 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||| ||| |||||| ||||| | | | ||||| || ||| Sbjct 251054 ATCCCTTCTTTATCCTGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTACT 251113 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | | |||| |||| || ||||| ||||| || || || ||||| Sbjct 251114 TCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||| | || | ||| || || | || || || || |||||||| || | Sbjct 251388 TACCTCCTCTAAGCCGTAGCACTAAGTGTAACGTCGATTCTTTCTGGATATTGTAGTCTG 251447 Query 38149 ACAAAACACGTTCG----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 ||||| |||| || |||||||||||||| ||||| |||| ||||||||||| Sbjct 251448 ACAAA----GTTCTAGAATCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGTTGATCA 251503 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | || | ||||| || ||| |||||| |||||||| | | || || | Sbjct 251504 GGCGGAATTCCTTCCTTATCCTGAATTTTCGTTTTCACATTTTCAATTGTGTCAGTGGGT 251563 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || | | |||| ||||||| || || ||||| || ||||||||||| Sbjct 251564 TCTACCTCAAGCGAAATATTTTTACCTGTTAATGTTTTTACAAATATCTGCAT 251616 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | || | ||| || || | ||| || || || |||||||| || | Sbjct 251160 TACCACCTCTAAGTCGAAGCACTAAGTGTAATGTGGATTCTTTCTGGATATTGTAGTCTG 251219 Query 38149 ACAAAACACGTTCG----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 ||||| |||| || ||||| |||||||| ||||| |||| || ||||| || Sbjct 251220 ACAAA----GTTCTAGAATCTTCTAACTGTTTTCCAGCAAAAATTAATCGCTGTTGGTCT 251275 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | || | |||||||||||| |||||| ||| ||| ||| | ||| || | Sbjct 251276 GGCGGAATCCCTTCTTTGTCCTGAATTTTCATCTTTACACTCTCAATAGTGTCGTTGGGT 251335 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || | ||| |||| || || ||||| || || || || || || Sbjct 251336 TCGACTTCCAAAGATATATTTTTTCCTGTTAAGGTCTTTACAAAAATTTGTAT 251388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334941803372582