Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 168 6e-37 seq391 138 1e-27 seq768 84.2 2e-11 >seq1 Length=3593316 Score = 168 bits (186), Expect = 6e-37 Identities = 167/214 (78%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || ||||| || |||||||||||| ||||||| | |||||||| | || Sbjct 1031827 AATGCAAATTTTCGTAAAAACATTGACCGGTAAAACCATCACCTTGGAAGTGGAACCATC 1031768 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || |||||||| |||| ||||||||| || ||||||||||| |||||||| | Sbjct 1031767 GGATACTATCGAAAATGTCA---AAGCAAAAATCCAA-GACAAAGAAGGTATTCCACCAG 1031712 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||||| | || |||||||| |||||||| ||||||| ||| || || ||||| Sbjct 1031711 ATCAGCAGCGTTTGATCTTTGCCGGAAAACAATTGGAAGATGGTCGAACATTGTCCGATT 1031652 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 | || || ||||||||||| || ||||||| || Sbjct 1031651 ATAACATCCAAAAAGAATCGACATTACATTTGGT 1031618 Score = 145 bits (160), Expect = 7e-30 Identities = 161/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||| || ||||| |||||| ||||||| | ||||| || | || Sbjct 1033481 ATGCAAATCTTCGTAAAAACATTGACTGGTAAAACCATCACTTTGGAAGTCGAACCATCG 1033422 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| | || |||| |||| ||| || |||||||| |||||||| || Sbjct 1033421 GACACCATCGAA--AATGTTAAAGCCAAAATTCAA-GATAAAGAAGGCATTCCACCAGAT 1033365 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||| || |||||||| ||||||| ||| ||| || |||||| Sbjct 1033364 CAGCAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGTCCGATTAT 1033305 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||||| ||||| || | ||||| || Sbjct 1033304 AATATTCAAAAGGAATCAACATTGCATTTGGT 1033273 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || ||||| |||||| |||||||| | || || || | ||| Sbjct 1032510 ATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATCACATTAGACGTTGAACCATCT 1032451 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| ||||| |||||| ||| || ||||| || |||||||| ||||| Sbjct 1032450 GATACAATCGAAAATGTGAAGGCAAAAATTCAG-GATAAAGAGGGAATTCCACCAGACCA 1032392 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || |||||||| |||||||||||||||| ||| || | |||||||| Sbjct 1032391 GCAACGTTTGATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACATTATCGGATTACAA 1032332 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 || |||||||| || || | ||||| || Sbjct 1032331 CATCCAAAAAGAGTCAACTTTGCATTTGGT 1032302 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || |||||||| |||||| |||| ||| | |||||||| | || Sbjct 1032738 ATGCAGATTTTTGTCAAAACTTTGACTGGTAAAACCATTACATTGGAAGTGGAACCCTCG 1032679 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || | ||| |||||| ||||||||||| |||||||| ||||| Sbjct 1032678 GATACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGACCAG 1032619 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| || |||||||| | ||||||| || || || |||||||| Sbjct 1032618 CAACGTTTGATTTTCGCTGGCAAACAGCTTGAAGATGGCCGAACATTGTCGGATTACAAC 1032559 Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202 |||||||||||||| || || ||| Sbjct 1032558 ATTCAAAAAGAATCGACACTTCAT 1032535 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||| |||||||| || ||| |||| || | ||||| || | || Sbjct 1033253 ATGCAAATTTTCGTAAAAACTTTGACTGGCAAAACCATTACTTTGGAAGTCGAACCATCG 1033194 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| |||| |||||| || |||||||| |||||||| || || Sbjct 1033193 GACACTATCGAAAATGTGAAAGCTAAAATCCAGGATAAAGAAGGTATTCCACCAGATCAG 1033134 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || |||||| | ||||||| || || || ||||| ||| Sbjct 1033133 CAACGATTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGAACATTGTCGGATTATAAT 1033074 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || |||||||||||||| ||||||| || Sbjct 1033073 ATACAAAAAGAATCCACCTTACATTTGGT 1033045 Score = 132 bits (146), Expect = 4e-26 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || |||||| | ||||| | ||||| ||| | || Sbjct 1032054 ATGCAAATTTTCGTCAAGACCCTAACTGGTAAAACGATCACTTTGGAAGTCGAGCCATCG 1031995 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| | || |||| || | ||| || || ||||| |||||||| || Sbjct 1031994 GATACAATCGAA--AATGTAAAAGCCAAGATTCAA-GATAAGGAAGGTATTCCACCAGAT 1031938 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | ||||| || || |||||||| ||||||| || || | ||||||| Sbjct 1031937 CAGCAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGCCGTACCTTATCCGATTAC 1031878 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||||||||||| ||||||| ||||| Sbjct 1031877 AATATTCAAAAAGAATCCACCTTACATTTGGTGCT 1031843 >seq391 Length=841353 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||||||||| || || || |||||| || | | || || || | || Sbjct 251616 ATGCAGATATTTGTAAAAACATTAACAGGTAAAAATATTTCGCTTGAGGTAGAACCCACT 251557 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || |||| | |||| ||| || || ||||| ||||| ||||| || Sbjct 251556 GACACAATTGAAAATGTGAAAACGAAAATTCAG-GATAAGGAAGGAATTCCGCCTGATCA 251498 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | |||||||| || ||||||||||||||| | | ||| || || ||||| Sbjct 251497 ACAACGATTAATTTTTGCTGGAAAACAATTAGAAGATTCTAGAACTTTGTCAGACTACAA 251438 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || |||||||| ||| |||| ||||||||| |||| |||||||| Sbjct 251437 TATCCAGAAAGAATCGACGTTACACTTAGTGCTACGGCTTAGAGGAGG 251390 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 || ||||| ||||||||||| || || || ||| || | | ||||| || | Sbjct 251388 ATACAAATTTTTGTAAAGACCTTAACAGGAAAAAATATATCTTTGGAAGTCGAACCCAAC 251329 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| ||| | ||| ||||| ||||||||||||||||| || |||||| Sbjct 251328 GACACTATTGAGAGTGTAAAGATGAAAATTCAGGACAAAGAAGGGATTCCGCCAGACCAA 251269 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | |||||||| || ||||| ||||||||| | | ||| || || |||||| Sbjct 251268 CAGCGATTAATTTTTGCTGGAAAACAGTTAGAAGATTCTAGAACTTTGTCAGACTACAAT 251209 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| |||| |||||||| | || ||||| || Sbjct 251208 ATCCAGAAAGAATCCACATTACACTTAGTGCTTCGACTTAGAGGTGG 251162 Score = 125 bits (138), Expect = 6e-24 Identities = 183/255 (72%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| |||||||| || ||| || | ||||||| ||| | Sbjct 251160 ATGCAAATTTTTGTAAAAACTTTGACAGGAAAAAATATTTCTCTCGAAGTAGAGCCAAAC 251101 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || |||| | |||| ||| || |||||||||||||| ||||| || Sbjct 251100 GATACCATTGAAAGCGTGAAAACGAAAATTCAG-GATAAAGAAGGGATTCCGCCTGATCA 251042 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||||| | |||||||| || || ||| | || ||| || || || |||||||| Sbjct 251041 ACAGCGGTTAATTTTTGCTGGAAAGCAACTTGACGATTCGCGGACATTGTCAGATTACAA 250982 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATT-ATTATA 25236 |||||||| ||||| || | ||| | ||| | || | ||||||||| || ||||| Sbjct 250981 CATTCAAAAGGAATCAACTTTGCATCTGGTGTTGCGGTTGAGAGGAGGATTTTAATTATT 250922 Query 25237 CTATTAACAAATAAA 25251 | | ||| | ||||| Sbjct 250921 CCAATAAAAGATAAA 250907 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || || || || || ||| || | || ||||| | | Sbjct 731052 ATGCAGATTTTCGTGAAAACATTAACAGGGAAGAACATTACCCTGGAGGTGGAACCAAAT 730993 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| ||||| | || |||||| ||||||||||| ||||| || || || Sbjct 730992 GACACTATTGAGTCCATCAAAACCAAAATCCAAGACAAAGAAGGAATTCCCCCGGATCAG 730933 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | |||||||||| || || ||| |||| || | |||||| | ||| ||||| Sbjct 730932 CAAAGACTTATTTTTGCTGGTAAGCAACTAGACGACAACCGCACTTTATCCGACTACAAC 730873 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| | ||||||||||| | || |||||||| Sbjct 730872 ATCCAGAAAGAATCCACAATTCATTTAGTGCTTCGTCTTAGAGGAGG 730826 >seq768 Length=1243675 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || |||||| | || ||||| | Sbjct 1130922 ATGCAAATCTTCGTGAAGACGCTCACGGGGAAGAACATCACCCTTGAGGTGGACCCAAAC 1130863 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| |||||| ||| |||| || | || ||||| || || ||||| || || Sbjct 1130862 GACACGATCGAGAGCGTCA---AAGCTAAGATCCAG-GACAAGGAGGGCATTCCGCCGGA 1130807 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | ||||||||||| || || || || || | ||||| | | || || Sbjct 1130806 CCAGCAGCGTCTGATTTTTGCCGGGAAGCAGTTGGATGACGGGCGCACGCTCGCGGACTA 1130747 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||| || ||||| || || ||| | || || ||||| |||| Sbjct 1130746 CAACATCCAAAAGGAGTCGACGATCCACTTGGTGCTGCGGCT 1130705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433321018273430