Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 358 7e-94 >seq1 Length=3593316 Score = 358 bits (396), Expect = 7e-94 Identities = 637/910 (70%), Gaps = 16/910 (2%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||| ||||||| |||||| ||||| |||| ||||||||| ||||||| || ||||| Sbjct 930130 CATGACACCACTTTTTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCTTC 930071 Query 92850 CAAAGATATCGAATTCACTAGTG--ATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 || ||||| | || | | |||||| | | ||||||| ||||||| || Sbjct 930070 TAATGATATTTGTTCCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACA-AT 930012 Query 92908 C-AACTCGTACAATAATCTATCAGCTACAA-ATTCTATGTACTGAGACATCAAATCACAA 92965 | || || |||||| | ||| || |||| |||| || || | ||||| || | | | Sbjct 930011 CTAATTCAACCAATAAACGATCGGC-ACAATATTCAATATAATCGGACATTAATTTAGCA 929953 Query 92966 TTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAAT-CTTTCTCGATTACAAC 93024 ||||| || | | ||| |||| || ||||| ||||||| ||| || || ||| Sbjct 929952 TTCATACCGATCAATGATACTGGTAATGCATCGGT-AAGAAATTCTTGTTCAATATTAAC 929894 Query 93025 GGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGAC-ATAATTGT 93083 || || | | ||||| | | || || ||| | ||||| || || Sbjct 929893 AGCATCAATAATAATTTCAACAATTCGTTGTGATGATGGACGAT-TACGAATATGATGAA 929835 Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143 ||| | || ||||| || |||||| ||||| || ||||| ||||| ||||| | Sbjct 929834 ACAAAAGACAGGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAAA 929775 Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 | || | ||| || | || || ||||| || |||||||| |||| ||||| ||| | Sbjct 929774 AGGTAAGACCAGGCATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCGG 929715 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263 |||||||||| ||||| || || |||||||| | | |||||||||||| | | |||| Sbjct 929714 AAAAAAATATTCCTTCAACAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGAAT 929655 Query 93264 TA-CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG 93322 | || || |||| || |||||| | |||||||||| | ||||||||| || || Sbjct 929654 CATCTTGTG-TCCAACGTATAGCCCATTTAGCTTTTTTCTCTACACAAGGTAGA-TTACG 929597 Query 93323 -ATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAG 93381 ||||| || ||||| ||||| | || | ||| || || |||| || || | Sbjct 929596 TATAGCATTGAATAGAAAATCTTGTTCATTACGATCCGATACATAGGTATTAATCAATAA 929537 Query 93382 AGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGC 93441 ||||||||||| ||||| ||||| || || |||||||| ||||| || ||||| | || Sbjct 929536 TGAATACATTTCTGAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTGC 929477 Query 93442 TTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATC 93501 ||| | || || || || || ||| | || | | ||||||||| || |||||||| Sbjct 929476 TTCTGGTATTTGTACATCACGAATAAAACGTTCAGCTAAATTTTCATTAACAATACCATC 929417 Query 93502 GGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCA-TCATCTTTAAGCT 93560 ||| |||||||||||||||| ||| || |||||||| ||| || ||||| | Sbjct 929416 ACTTGCAGCAAAAAAAGCCAATACATGTGAAATGAAATGTTTTTCATTCGAATTTAA-TT 929358 Query 93561 TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTT 93620 ||| ||||| ||||| | ||||| |||||||| || |||||||| ||||||| Sbjct 929357 TATTCCAATGTACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATGCTT 929298 Query 93621 CTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGAT 93680 | |||||||||||||| ||| || || ||||||||||||||||| | |||||||||| Sbjct 929297 CAGCTTTTTTGTACATTGTCCAAATATCATGATATTGAATTGGAAACAAAACAAAACGAT 929238 Query 93681 TAGGGTTATC 93690 | || || || Sbjct 929237 TTGGATTTTC 929228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556851597875280