Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1 149 5e-31 seq391 107 2e-18 >seq1 Length=3593316 Score = 149 bits (164), Expect = 5e-31 Identities = 177/239 (74%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||||||||| || ||||| ||||||| |||||||| ||| ||||| |||||| Sbjct 1031827 AATGCAAATTTTCGTAAAAACATTGACCGGTAAAACCATCACCTTGGAAGTGGAACCATC 1031768 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| || | | | || ||| |||||| ||||||||||| |||| ||||| Sbjct 1031767 GGATACTATCGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA 1031708 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || | | || | ||| || ||||||||||||||| | ||| || |||||||||| Sbjct 1031707 GCAGCGTTTGATCTTTGCCGGAAAACAATTGGAAGATGGTCGAACATTGTCCGATTATAA 1031648 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAA-TAAATAA 111423 || ||||||||||| ||| ||||||| || ||||| || || ||||| || |||| || Sbjct 1031647 CATCCAAAAAGAATCGACATTACATTTGGTATTGCGACTTCGTGGTGGAAACTAAACAA 1031589 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| |||||||| | ||||| ||||| ||||| ||||| || || Sbjct 1032282 ATGCAAATTTTCGTCAAAACTCTTACCGGTAAAACTATTACATTGGAAGTCGAGCCATCT 1032223 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | |||||| ||||| |||||||| || ||||| ||||| Sbjct 1032222 GATACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAG 1032163 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | ||| || || |||||||||||| | |||| || ||||||| || Sbjct 1032162 CAACGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGAAGAACTTTGTCCGATTACAAC 1032103 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| ||||| ||| | ||||| || || ||||| || ||||| Sbjct 1032102 ATTCAAAAGGAATCGACATTGCATTTGGTTTTACGTCTCCGTGGTGG 1032056 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || ||||| |||| |||||||||||||| ||||| ||||| Sbjct 1033253 ATGCAAATTTTCGTAAAAACTTTGACTGGCAAAACCATTACTTTGGAAGTCGAACCATCG 1033194 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || | | | || ||| ||||| || |||||||| |||| ||||| Sbjct 1033193 GACACTATCGAAAATGTGAAAGCTAAAATCCAGGATAAAGAAGGTATTCCACCAGATCAG 1033134 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | ||| || |||||| | |||||| ||| || | ||||||||| Sbjct 1033133 CAACGATTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGAACATTGTCGGATTATAAT 1033074 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||||||||||||| || ||||||| || |||||| | || ||||| Sbjct 1033073 ATACAAAAAGAATCCACCTTACATTTGGTATTGCGTTTACGTGGTGG 1033027 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || || ||||| |||| || |||||||| || ||||| ||||| Sbjct 1033481 ATGCAAATCTTCGTAAAAACATTGACTGGTAAAACCATCACTTTGGAAGTCGAACCATCG 1033422 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | || ||| |||||| || ||||||||| |||| ||||| Sbjct 1033421 GACACCATCGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGCATTCCACCAGATCAG 1033362 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | ||| || ||||||||||||||| | ||| || ||||||||||| Sbjct 1033361 CAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGTCCGATTATAAT 1033302 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| ||||| ||| | ||||| || |||||||| || || || Sbjct 1033301 ATTCAAAAGGAATCAACATTGCATTTGGTATTGCGTCTACGTGGCGG 1033255 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||||||||| |||| || ||||||||||| ||||| ||||||| Sbjct 1032738 ATGCAGATTTTTGTCAAAACTTTGACTGGTAAAACCATTACATTGGAAGTGGAACCCTCG 1032679 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || ||||| ||||||||||| |||| || || Sbjct 1032678 GATACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGACCAG 1032619 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| || |||||||| | |||||| ||| || | ||||| || Sbjct 1032618 CAACGTTTGATTTTCGCTGGCAAACAGCTTGAAGATGGCCGAACATTGTCGGATTACAAC 1032559 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||||||||| ||||| ||| | || ||||| | || ||||| Sbjct 1032558 ATTCAAAAAGAATCGACACTTCATCTCGTATTGCGATTACGTGGTGG 1032512 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| ||||| || | || || ||||| || || ||||| || || Sbjct 1032054 ATGCAAATTTTCGTCAAGACCCTAACTGGTAAAACGATCACTTTGGAAGTCGAGCCATCG 1031995 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | |||||| || ||| || || ||||| |||| ||||| Sbjct 1031994 GATACAATCGAAAATGTAAAAGCCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAG 1031935 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| || || ||||||||||||||| || | ||||||| ||| Sbjct 1031934 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGCCGTACCTTATCCGATTACAAT 1031875 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||||||||| || ||||||| ||| | ||||| || ||||| Sbjct 1031874 ATTCAAAAAGAATCCACCTTACATTTGGTGCTTCGTCTCCGTGGTGG 1031828 >seq391 Length=841353 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 || ||||||||||| || || | || || |||| || | ||||| ||||||| | Sbjct 251388 ATACAAATTTTTGTAAAGACCTTAACAGGAAAAAATATATCTTTGGAAGTCGAACCCAAC 251329 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| ||||| |||||| ||||||||||| |||| || ||| Sbjct 251328 GACACTATTGAGAGTGTAAAGATGAAAATTCAGGACAAAGAAGGGATTCCGCCAGACCAA 251269 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | | |||| ||| || ||||| || |||||||||| |||| || | || || ||| Sbjct 251268 CAGCGATTAATTTTTGCTGGAAAACAGTTAGAAGATTCTAGAACTTTGTCAGACTACAAT 251209 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || |||||||| ||| |||| |||||| | || || | ||||| Sbjct 251208 ATCCAGAAAGAATCCACATTACACTTAGTGCTTCGACTTAGAGGTGG 251162 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||| || ||||| | || || || | ||||||| |||| |||||| | Sbjct 731052 ATGCAGATTTTCGTGAAAACATTAACAGGGAAGAACATTACCCTGGAGGTGGAACCAAAT 730993 Query 111247 GATTCTGTTG-GCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || || ||| | | ||||| |||| | ||||||||||| ||||| ||||| Sbjct 730992 GACACTATTGAGTCCATCAAAACCAAAA-TCCAAGACAAAGAAGGAATTCCCCCGGATCA 730934 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||| ||||||| ||| || || ||| | || || ||| | |||| || || Sbjct 730933 GCAAAGACTTATTTTTGCTGGTAAGCAACTAGACGACAACCGCACTTTATCCGACTACAA 730874 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCT 111404 || || |||||||| ||| | ||||||||| | ||||| Sbjct 730873 CATCCAGAAAGAATCCACAATTCATTTAGTGCTTCGTCT 730835 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| |||| || |||| ||| | | ||| || || | | Sbjct 251160 ATGCAAATTTTTGTAAAAACTTTGACAGGAAAAAATATTTCTCTCGAAGTAGAGCCAAAC 251101 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| || ||| |||||| || |||||||| |||| |||||| Sbjct 251100 GATACCATTGAAAGCGTGAAAACGAAAATTCAGGATAAAGAAGGGATTCCGCCTGATCAA 251041 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || || | |||| ||| || || ||| | || ||||| || || | ||||| || Sbjct 251040 CAGCGGTTAATTTTTGCTGGAAAGCAACTTGACGATTCGCGGACATTGTCAGATTACAAC 250981 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCG 111401 || ||||| ||||| || | ||| | |||||||| Sbjct 250980 ATTCAAAAGGAATCAACTTTGCATCTGGTGTTGCG 250946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423033184032400