Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq335 345 8e-90 >seq335 Length=939964 Score = 345 bits (382), Expect = 8e-90 Identities = 1210/1849 (65%), Gaps = 99/1849 (5%) Strand=Plus/Minus Query 243872 AAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATG 243931 ||||| ||| ||||| |||| || ||| ||||| ||| | | | |||| |||| Sbjct 180374 AAGAGCGAGAGCGACTGCGACTGGCAGATGAACGGCGCGCGCGCGACCGACATGTCGATG 180315 Query 243932 -AGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAA 243990 || | | ||| ||||| | | ||||||| | | | ||| || ||| |||| Sbjct 180314 TAGCTGCG-CTGCTTGATCTCCCAGGTCGTCTTGAACAGCGCCTTCAGCGGCTGCGGGAT 180256 Query 243991 CCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCG-CATGTTATCGT 244049 | ||||| |||||||||||| ||||| |||||||||| ||| || || Sbjct 180255 TTCCTCGATCAGCTGCACCGAGCCGTTGTGCGCGATGAGCTGC-TGCTTCAGCGCCTCCG 180197 Query 244050 TCCACAGGCCCAAGCG-CTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCT 244108 |||||| ||| ||| | ||||| |||| |||| |||| | ||| ||||| Sbjct 180196 ACCACAG-CCCGAGCTTCGAGAGCGCGAGCACCAAGTGCTTGTTGAGCACGCAGAACTCG 180138 Query 244109 CCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTG 244168 || |||||||||||| | | ||| || |||||||| ||| ||| Sbjct 180137 CCGCTGAGCACGCGGCGCGTAAACACGTTCGACGTGTACGGCTCGAACGACTCGCAGTTC 180078 Query 244169 CCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACG 244228 || || ||||||| || ||| |||||||| |||| |||||||| ||||| | || Sbjct 180077 CCGAGGATCTGCGAAGTCGACGCCGTCGGCATCGGCGCGACCAGCAGGCTGTTGCGCAGC 180018 Query 244229 CCGTGCCTCTGGAT-GCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTC--- 244284 |||| | | || || | | ||||| | ||||||||||||||||||||| | Sbjct 180017 CCGTACTTGACCATCGCCTCG-CGCAGCTCCTCCCAGTCCCACATGCCCGAGAGCTGAAT 179959 Query 244285 ---------------CTCGCG---TTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT 244326 |||||| || | ||||| ||| ||||| | || | Sbjct 179958 CTCACGCAAGTTCCGCTCGCGCCGTTCTTCGTTCCACAAGTCGAACTGGAATTTGCCTTC 179899 Query 244327 GCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCT 244386 ||| |||| ||| ||| || ||| ||| || |||| || || |||| ||| Sbjct 179898 GCTCGCGGGCGAGCCTTCGAAGCTCGCGTACGGCCCGTGCTCCTTCGCGAGCTCGACGCT 179839 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 | || | ||| || ||||||| ||||||||||| ||||||||| ||| |||| Sbjct 179838 CGCGGTCACCGCGCCGAAGTAGATCGTCTCGAAGATGTTCTTGTTCACTTCGTTCGCCTC 179779 Query 244447 GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGA-CGTCGGCCAGTCCCTGCACGCCGA 244505 | || | ||| || | | || || | || || |||| || | || |||||||||| Sbjct 179778 GGGGCTGTCGAACGGCAGCCGCAGCAGC-TGCAGCGCGTCCGCGAAGCCTTGCACGCCGA 179720 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTT---CGGGCACGGGGTAAAAGT 244562 ||||||| || | ||| ||| |||| |||| || | ||| |||| || ||| Sbjct 179719 TGCCGATCGGCCGGTGCCGCAGGTTGCTGCGCCGCGCCTTCTCGGTCACG---TAGAAGC 179663 Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGT---GATCATGCGGACGACGTCGGCCAGCA 244619 |||||||||| ||||| ||||| | || |||| | || |||| ||| |||| Sbjct 179662 CCACGTCGATCACGTTGTTCAGGTTCTGCGTCACGATCTT-CG--CGACCTCGAACAGCT 179606 Query 244620 GCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGG 244679 || |||| | | || | || ||| | ||| || || || || Sbjct 179605 TCT------CGTAGTTGAAGCGCCGCTTCTCGACG----TCC--ACGTACGCGGGCAG-- 179560 Query 244680 CGACGCTG--GCCAGGTTGCAGACGGCCACCTCCTC-CGAGTTGGTGTACTGGACAATCT 244736 |||| | || |||||||| || || | |||||| || | | ||||||| || | | Sbjct 179559 CGACAGCGACGCGAGGTTGCACACCGCGATCTCCTCGCGCGACG-TGTACTGCACCACTT 179501 Query 244737 CGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGC 244796 | ||||| ||||| | ||| ||||||||| |||| | | || || |||||| ||||| Sbjct 179500 CCGTGCACAGGTTCGAGGACTGGATGGTGCCGAGGTTCCGCTGGTTCGACTTGCGGTTGC 179441 Query 244797 AGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCG---ACGAGGACGC 244853 | ||||||||||| | || | | || || ||||||| ||| | | || | ||| Sbjct 179440 ACGCGTCCTTGTACACCAAGTACGGATTGCCCGTCTCGATCTGCGTGTTCACAATGACCG 179381 Query 244854 TGTTCCAGAGGTCCCTAGCCTTGACCGTCCTG-CGA-GCCTTGCCCTCTGCCTCGTAGCG 244911 | |||||| | | ||||| ||| || ||| || ||| || ||||||||||| Sbjct 179380 T---CCAGAGCGCGCGCGCCTTCACCTGCCGCACGAAGCGCTGC--TCGGCCTCGTAGCG 179326 Query 244912 GGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGG 244971 |||||||| || |||||||| | ||||||||| ||| | ||| || || ||| || Sbjct 179325 CGTGTACAGCGCGTCGAACTCCGCGCCCCAGACTTCGAACAAGCCCGGCGACTGCGCGGG 179266 Query 244972 GCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCA 245031 ||||| ||||||||| ||||| | || | || | ||||||| | |||| ||| | Sbjct 179265 ACACATCAGACTCCACACGCCGTCTTCGTCCACGCGGCGCATGAACAAGTCGTTGATGTA 179206 Query 245032 GAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTC 245091 || || |||||||||||| || | | ||| || ||| ||| || |||||| Sbjct 179205 CAGCCCCAGGAAGAGGTCCCGCGTGCGCAACTCTTCGTTGCCGTGGTTGCGCCGCAGCTC 179146 Query 245092 CAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCG 245151 | || || |||| ||| ||||||| ||||||| ||||| |||| | |||| || Sbjct 179145 GATGAACTCGAAGATGTCTGCGTGCCACGGCTCCAGGTAGATCGCGAAGCCGCCTTTGCG 179086 Query 245152 CTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCAC 245211 |||| ||| |||||||| || | | || ||||||||| | |||||| | ||||| Sbjct 179085 CTTGCCGCCGCCCTGGTCGACGTAGCGCGCGGTCGCGTTGAACACGCGCAGCATCGGCAC 179026 Query 245212 TATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCT 245271 || ||||| | | ||||| |||||| |||||| ||| | | | | || ||| Sbjct 179025 GATCCCGTTGCTGCGCCCGTTCGTGCCCGCGATGTACGCGTTCGTCGCGCGGATCTTGTG 178966 Query 245272 GATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTC 245331 ||| | | || | ||||| |||| |||| ||| | ||||| ||| | ||||| Sbjct 178965 GATCGCGAGCCCGATCCCGCCAGCGTACTTGCTGATCACCGCGCACTCCTTCAGCGTGTC 178906 Query 245332 TGCTATGCCCTCCATGCTGTC--CGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGG 245389 |||||||| || ||| || | ||| | |||||||||||| ||| ||||| Sbjct 178905 GAAAATGCCCTCGATCGAGTCGTCGGC--CATCTGCAGCAGAAAGCAGCTGGAGAGCTG- 178849 Query 245390 GGCTTGGGGCTGCA----CGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCT 245445 ||| ||| || | ||||||||| || || | |||||| | || | ||| Sbjct 178848 ---TTGCCGCTTCAGCCCGGCGTTGAACAGCGTCGGCGTCGCGTGGATGAAAAACTTGCT 178792 Query 245446 CGAGAGGAACCCGTACGTCTGGAGCA-GAGCGTCGATGTTGTCGCC---GTGGATCTGCA 245501 ||| | | || |||||||| | | ||| | | |||||| ||||||| || Sbjct 178791 CGACATCAGCCGGTACGTCTCCAAAATCCGCGGCAA----GTCGCCCAAGTGGATC-GC- 178738 Query 245502 GGGCG-CAC-CTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTC-CCTTGA 245558 | || ||| | ||||| ||| ||| ||| ||||| | || | | || |||| | Sbjct 178737 GACCGACACGCGCATGAACATGTACTGCGGCCGCTCGA-CGATCTTTTTGTTCGCCTTCA 178679 Query 245559 GCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG-GCGTGG 245617 ||| ||| |||||||||||||||||||| || ||||| | | | |||||| || | Sbjct 178678 GCAGGTACGAGCGCTCGAGCGTCTTGAAGCCGAAGTAGTCGAACTCGAAGTCGTTCGCCG 178619 Query 245618 TGCCTGACGGCTGCGTCGAGTCTCTCGGCGTGCTTCTGACTGACCTCGT 245666 | | || || ||||| || | ||||||||| ||| || ||||| Sbjct 178618 AGAC-GATCGCCGCGTCCAGCTCCGCGGCGTGCTGCTGCACGAACTCGT 178571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944323594794720