Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq768 95.1 1e-14 seq558 93.3 3e-14 seq391 93.3 3e-14 seq658 89.7 4e-13 seq657 89.7 4e-13 >seq768 Length=1243675 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | |||||||||||||| || | ||| |||||| || |||||||| || || Sbjct 1130696 CCGCCACGCAGCCGCAGCACCAAGTGGATCGTCGACTCCTTTTGGATGTTGTAGTCCGCG 1130755 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| ||||| ||||| |||||||| ||||| |||||||| ||| ||| Sbjct 1130756 AGCGTGCGCCCGTCATCCAACTGCTTCCCGGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1130815 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 1130816 ATGCCCTCCTTGTCC 1130830 >seq558 Length=611125 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/234 (71%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 |||| || | ||| ||||| |||| |||| ||| ||| |||||||||||||| || | Sbjct 303942 AACCGCCGCGCAGTCGCAGTACCAAGTGAATAGTGGACTCTTTCTGAATGTTGTAGTCCG 303883 Query 33959 CCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | | || ||||||| | ||||| || ||||| |||| ||||||||| ||| || Sbjct 303882 CGAGCGTGCGTCCGTCGTCGAGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCG 303823 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATC-AGTAGATTCG 34077 | | || |||||||||| | | || |||| || || | | | ||| || | || | Sbjct 303822 GAATGCCCTCTTTGTCC-TGGATCTTAGCTT--TG--ACGCTCTCGATCGTGTCGTTTGG 303768 Query 34078 ---CA-TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || ||||| |||||| | || || || ||||| || ||||| || ||||| Sbjct 303767 GTCCACTTCGAGCGTTATGTTCTTGCCCGTGAGTGTCTTGACAAATATCTGCAT 303714 >seq391 Length=841353 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 33898 AAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCT 33957 || |||||||||| ||||| ||||||||| | || ||||| ||||||||||||||| Sbjct 250931 AATCCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCT 250990 Query 33958 GCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017 | |||| ||| ||||| | |||||| || ||||| || | ||||| ||||| | Sbjct 250991 GACAATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGC 251050 Query 34018 GGCACGCTCTCTTTGTCCATAATTTT 34043 || | | ||||| ||| |||||| Sbjct 251051 GGAATCCCTTCTTTATCCTGAATTTT 251076 >seq658 Length=722326 Score = 89.7 bits (98), Expect = 4e-13 Identities = 80/98 (82%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||| |||| || || ||| || ||| | Sbjct 206983 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAATTGGTCAACATCCAATGAATC 207042 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 | ||||||| || ||||||||||| ||| || ||||| Sbjct 207043 ATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 207080 Score = 89.7 bits (98), Expect = 4e-13 Identities = 80/98 (82%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||| |||| || || ||| || ||| | Sbjct 206983 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAATTGGTCAACATCCAATGAATC 207042 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 | ||||||| || ||||||||||| ||| || ||||| Sbjct 207043 ATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 207080 >seq657 Length=2482312 Score = 89.7 bits (98), Expect = 4e-13 Identities = 80/98 (82%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||| |||| || || ||| || ||| | Sbjct 392 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAATTGGTCAACATCCAATGAATC 333 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 | ||||||| || ||||||||||| ||| || ||||| Sbjct 332 ATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 295 Score = 89.7 bits (98), Expect = 4e-13 Identities = 80/98 (82%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||| |||| || || ||| || ||| | Sbjct 392 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAATTGGTCAACATCCAATGAATC 333 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 | ||||||| || ||||||||||| ||| || ||||| Sbjct 332 ATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397056002580244