Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq558 149 1e-30 seq1 147 5e-30 seq768 116 9e-21 seq391 107 5e-18 >seq558 Length=611125 Score = 149 bits (164), Expect = 1e-30 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| |||| ||||| | ||||| ||| ||||| || || || ||||| ||| Sbjct 303940 CCGCCGCGCAGTCGCAGTACCAAGTGAATAGTGGACTCTTTCTGAATGTTGTAGTCCGCG 303881 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||||||||| || | || || || || ||||||| ||||| || || Sbjct 303880 AGCGTGCGTCCGTCGTCGAGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCGGA 303821 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || ||||| |||||||| || ||||| ||| | || || | ||| | | || ||| Sbjct 303820 ATGCCCTCTTTGTCCTGGATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACT 303761 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTC 288483 |||||||| || |||| || || || |||||||| ||||||||||| ||||| ||| Sbjct 303760 TCGAGCGTTATGTTCTTGCCCGTGAGTGTCTTGACAAATATCTGCATCATGTTGTTC 303704 >seq1 Length=3593316 Score = 147 bits (162), Expect = 5e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || |||| | ||| | ||| | || |||||||||||| ||||| |||| Sbjct 1031599 TCCACCACGAAGTCGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCGGA 1031658 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || ||||| ||||||||||| || ||||||| |||||| ||| ||| Sbjct 1031659 CAATGTTCGACCATCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTGG 1031718 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||| || |||||||| ||||| || ||||| |||| ||| | ||| || Sbjct 1031719 AATACCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCGATAGTATCCGATGGTTCCAC 1031778 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| | ||||| || || ||||||| || || ||||| || |||||| Sbjct 1031779 TTCCAAGGTGATGGTTTTACCGGTCAATGTTTTTACGAAAATTTGCATT 1031827 Score = 134 bits (148), Expect = 3e-26 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | ||| || | ||| | ||| ||||||||| ||||| || |||| Sbjct 1031827 TCCACCACGGAGACGAAGCACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAATCGGA 1031886 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || ||||| |||||||| || ||||| |||| ||| || ||| ||| Sbjct 1031887 TAAGGTACGGCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTGGTGG 1031946 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT---TC 288422 || ||||| ||||| || || || ||||| || ||||| || | ||| |||| || Sbjct 1031947 AATACCTTCCTTATCTTGAATCTTGGCTTTTACATTTTCGATTGTATC---CGATGGCTC 1032003 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | |||||||| || || || || ||||||||||| || ||||| Sbjct 1032004 GACTTCCAAAGTGATCGTTTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 1032054 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || | | | ||| | ||| | ||| ||||||||| |||||||| || | Sbjct 1033026 TCCACCACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGA 1033085 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || ||||| | |||||| || || ||||||| || || ||| ||| Sbjct 1033086 CAATGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGG 1033145 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||||||||||||||| |||||||| ||||| |||| || | ||| || Sbjct 1033146 AATACCTTCTTTATCCTGGATTTTAGCTTTCACATTTTCGATAGTGTCCGATGGTTCGAC 1033205 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | || || || || || |||| ||| || ||||| || ||||| Sbjct 1033206 TTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || || || |||| | || | ||| ||||| ||||| ||||| || || Sbjct 1032091 TTCCTTTTGAATGTTGTAATCGGACAAAGTTCTTCCATCTTCCAATTGCTTTCCGGCAAA 1032150 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| || || ||| |||||| ||||| ||||| ||||||||||| ||||| || Sbjct 1032151 GATCAATCGTTGCTGA---TCTGGGGGAATTCCCTCTTTGTCCTGGATTTTGGCTTTTAC 1032207 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | ||| | || ||||| | || || || || ||||| ||||| || Sbjct 1032208 ATTTTCGATCGTATCAGATGGCTCGACTTCCAATGTAATAGTTTTACCGGTAAGAGTTTT 1032267 Query 288459 GACGAATATCTGCAT 288473 |||||| || ||||| Sbjct 1032268 GACGAAAATTTGCAT 1032282 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | || | ||||||||||| || ||||||||| || || || || | Sbjct 1032512 CCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGAC 1032571 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | ||||| || ||||| |||| ||| || || ||| Sbjct 1032572 AATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGA 1032631 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||||||||| || |||||||| || || || ||||| || | ||| | ||| ||| Sbjct 1032632 ATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCACT 1032691 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || || || || |||| ||| ||||| || |||||||| Sbjct 1032692 TCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||||| || || || | | || || || |||||||||||||| || || ||| Sbjct 1032320 TCTTTTTGGATGTTGTAATCCGATAATGTACGACCATCTTCTAATTGTTTACCGGCAAAG 1032379 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| || || ||| ||||| ||||||||||| ||||| || ||||| ||| Sbjct 1032380 ATCAAACGTTGCTGGTCTGGTGGAATTCCCTCTTTATCCTGAATTTTTGCCTTCACATTT 1032439 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | ||| || || | ||||| || || || |||| || || ||| Sbjct 1032440 TCGATTGTATCAGATGGTTCAACGTCTAATGTGATGGTTTTACCAGTCAATGTTTTCACG 1032499 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 1032500 AAAATTTGCAT 1032510 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| |||||||| |||| | || || || ||||| |||||||| || || || Sbjct 1033290 TTCCTTTTGAATATTATAATCGGACAAAGTACGACCATCTTCCAATTGTTTACCAGCAAA 1033349 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| || || ||| ||| || ||||||||||| || ||||| ||||| || || Sbjct 1033350 GATCAATCGTTGCTGATCTGGTGGAATGCCTTCTTTATCTTGAATTTTGGCTTTAACATT 1033409 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | ||| ||||| | ||||| || || || |||| || || || Sbjct 1033410 TTCGATGGTGTCCGATGGTTCGACTTCCAAAGTGATGGTTTTACCAGTCAATGTTTTTAC 1033469 Query 288462 GAATATCTGCATTAT 288476 ||| || ||||| || Sbjct 1033470 GAAGATTTGCATGAT 1033484 >seq768 Length=1243675 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| ||||||||||| ||||| || || || || || || || Sbjct 1130732 TCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCATCCAACTGCTTCCCGGCAAAA 1130791 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || || || || || || |||||||| || ||||| ||| | Sbjct 1130792 ATCAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTGACGCTC 1130851 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | | || || || || ||||| ||||||| || || ||||| ||| Sbjct 1130852 TCGATCGTGTCGTTTGGGTCCACCTCAAGGGTGATGTTCTTCCCCGTGAGCGTCTTCACG 1130911 Query 288463 AATATCTGCATTAT 288476 || || ||||| || Sbjct 1130912 AAGATTTGCATCAT 1130925 >seq391 Length=841353 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| |||||||| ||||| | | || | ||||||||||||||||| || || Sbjct 251425 TTCTTTCTGGATATTGTAGTCTGACAAAGTTCTAGAATCTTCTAATTGTTTTCCAGCAAA 251484 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | || |||||| | || |||||||| |||||||| ||||||| |||||| || Sbjct 251485 AATTAATCGTTGTTGATCAGGCGGAATTCCTTCCTTATCCTGAATTTTCGTTTTCACATT 251544 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | | |||||| || |||| || | || || || | || || || Sbjct 251545 TTCAATTGTGTCAGTGGGTTCTACCTCAAGCGAAATATTTTTACCTGTTAATGTTTTTAC 251604 Query 288462 GAATATCTGCAT 288473 ||||||||||| Sbjct 251605 AAATATCTGCAT 251616 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 288319 TCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTA 288378 || || | ||| ||||| || || || | ||||||||| | || || ||||||||| Sbjct 251006 TCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGGAATCCCTTCTTTA 251065 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 ||||| ||||||| ||||||| |||| || | |||| | | ||||||||||| | || Sbjct 251066 TCCTGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTACTTCGAGAGAAATA 251125 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||| ||| || || || || ||||| Sbjct 251126 TTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 Score = 93.3 bits (102), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || | |||||| ||| |||||| ||||| || ||||||| | ||||| ||| Sbjct 730840 AAGCACTAAATGAATTGTGGATTCTTTCTGGATGTTGTAGTCGGATAAAGTGCGGTTGTC 730899 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTT 288377 |||| ||| || || || || || || | || ||| || ||| ||||||||||| Sbjct 730900 GTCTAGTTGCTTACCAGCAAAAATAAGTCTTTGCTGA---TCCGGGGGAATTCCTTCTTT 730956 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 || |||||||| | ||| | | || |||| || | | ||| || || || || || Sbjct 730957 GTCTTGGATTTTGGTTTTGATGGACTCAATAGTGTCATTTGGTTCCACCTCCAGGGTAAT 731016 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||| || | || || ||||| |||||||| Sbjct 731017 GTTCTTCCCTGTTAATGTTTTCACGAAAATCTGCAT 731052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179634418866316