Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq335 123 2e-23 seq391 120 3e-22 seq1 113 4e-20 seq558 86.0 6e-12 >seq335 Length=939964 Score = 123 bits (136), Expect = 2e-23 Identities = 353/529 (67%), Gaps = 13/529 (2%) Strand=Plus/Minus Query 153603 GACGCCAGATTACAGACGGCCGTCTCTTCG-GCGTCGCTGTACTGCACGATCTCGGCGCA 153661 ||||| || || || || || |||| ||| ||| || |||||||||| | || | ||| Sbjct 179552 GACGCGAGGTTGCACACCGCGATCTCCTCGCGCGACG-TGTACTGCACCACTTCCGTGCA 179494 Query 153662 GAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTC 153721 ||||| | | | ||| ||| | || |||| || ||||| ||||||||||| Sbjct 179493 CAGGTTCGAGGACTGGATGGTGCCGAGGTTCCGCTGGTTCGACTTGCGGTTGCACGCGTC 179434 Query 153722 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAG 153781 ||| | | || |||||| ||| ||||||| ||||| | || || | | | || Sbjct 179433 CTTGTACACCAAGTACGGATTGCCCGTCTCGATCTGCGTGTTCACAATGACCGTCCAGAG 179374 Query 153782 GTCCTGCGCTCGCACCCGCTGC-CGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTC 153840 | |||| |||| || || ||| |||| |||| |||||| ||| |||||| | Sbjct 179373 CGCGCGCGCCTTCACCTGCCGCACGA-AGCGCTGCTCGGCCTCGTAGCGCGTGTACAG-C 179316 Query 153841 GC-TCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGC 153899 || || ||||| |||| || ||| | ||| || |||| ||||||||||| Sbjct 179315 GCGTCGAACTCCGCGCCCCAGACTTCGAACAAGCCCGGCGACTGCGCGGGACACATCAGA 179256 Query 153900 GACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTAC 153959 ||||| |||| ||| ||||| |||||||||| || | | ||| | Sbjct 179255 CTCCACACGCCGTCTTCGTCCACGCGGCGCATGAACAAGTCGTTGATGTACAGCCCCAGG 179196 Query 153960 ATGAGGTCGCGCGCCTTGCAA-TCCTCCGCGCCCATGTTGCGTTTCAGATTGA-GCACGC 154017 | |||||| |||| |||| || || ||| |||||| ||| | || | || | Sbjct 179195 AAGAGGTCCCGCG-TGCGCAACTCTTCGTTGCCGTGGTTGCGCCGCAGCTCGATGAACTC 179137 Query 154018 TATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTT---TC 154074 | ||||||| |||||||| || || | ||||| || | | | ||||| ||||| | Sbjct 179136 GA-AGATGTCTGCGTGCCACGGCTCCAGGTAGATCGCGAAGCCGCCTTTGCGCTTGCCGC 179078 Query 154075 CGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGG 154123 ||||||| ||||||| |||| | | |||||| ||||||| ||| || Sbjct 179077 CGCCCTGGTCGACGTAGCGCGCGGTCGCGTTGAACACGCGCAGCATCGG 179029 >seq391 Length=841353 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| ||||| || | ||| | |||| ||||||||||||||||| || | Sbjct 250934 CCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGAC 250993 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||||| || || ||||| || || | | | |||| |||||||| || || || Sbjct 250994 AATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGGA 251053 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT-AATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||| |||| ||||| | ||| | ||| ||| | | ||| || Sbjct 251054 ATCCCTTCTTTATC-CTGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTAC 251112 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | | |||| || |||| ||||||||||||||| ||||| Sbjct 251113 TTCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 ||||| |||| | || || || || || |||||||| || ||| | || || || Sbjct 251408 ACTAAGTGTAACGTCGATTCTTTCTGGATATTGTAGTCTGACAAAGTTCTAGAATCTTCT 251467 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 | |||||| || | | | |||| || ||||| || || || || ||||| || || || Sbjct 251468 AATTGTTTTCCAGCAAAAATTAATCGTTGTTGATCAGGCGGAATTCCTTCCTTATCC-TG 251526 Query 138526 ATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 | |||| ||||| | | ||| | ||||| || | || ||||| | || | |||| Sbjct 251527 AATTTTCGTTTTCACATTTTCAATTGTGTCAGTGGGTTCTACCTCAAGCGAAATATTTTT 251586 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || | ||||||||||| |||||||| Sbjct 251587 ACCTGTTAATGTTTTTACAAATATCTGCAT 251616 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | |||||||| || | || || || || |||||||||||| Sbjct 730826 CCTCCTCTAAGACGAAGCACTAAATGAATTGTGGATTCTTTCTGGATGTTGTAGTCGGAT 730885 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| || ||||| ||||| | | | || || | || || ||||| || Sbjct 730886 AAAGTGCGGTTGTCGTCTAGTTGCTTACCAGCAAAAATAAGTCTTTGCTGATCCGGGGGA 730945 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG-TTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| || |||| ||||| || | || | ||||| | | ||||| Sbjct 730946 ATTCCTTCTTTGTC-TTGGATTTTGGTTTTGATGGACTCAATAGTGTCATTTGGTTCCAC 731004 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | | || || || | ||||| || ||||||||||| Sbjct 731005 CTCCAGGGTAATGTTCTTCCCTGTTAATGTTTTCACGAAAATCTGCAT 731052 >seq1 Length=3593316 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | |||||| || ||||| | |||| ||||||||||| || || ||| | Sbjct 1033255 CCGCCACGTAGACGCAATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCGGAC 1033314 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | ||||||||| | | |||| | || || || || || || Sbjct 1033315 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGA 1033374 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||| |||| | ||||| | ||| | |||||| | | || || Sbjct 1033375 ATGCCTTCTTTATC-TTGAATTTTGGCTTTAACATTTTCGATGGTGTCCGATGGTTCGAC 1033433 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||||||||||||| |||||||| || || |||||| Sbjct 1033434 TTCCAAAGTGATGGTTTTACCAGTCAATGTTTTTACGAAGATTTGCATG 1033482 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 ||||| || ||||||| | || || ||||| ||||| || ||| || || || Sbjct 1031612 CGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCGGACAATGTTCGACCA 1031671 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | |||||| |||| | |||| | |||||| || || || || |||||||||||| Sbjct 1031672 TCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTTTG 1031731 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||||||| ||| | | ||| | || || | | ||||| || | || | Sbjct 1031732 TCTTGGATTTTTGCTTTGACATTTTCGATAGTATCCGATGGTTCCACTTCCAAGGTGATG 1031791 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||||| |||| |||||||| ||||| ||||| Sbjct 1031792 GTTTTACCGGTCAATGTTTTTACGAAAATTTGCAT 1031826 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || |||||||| || ||||||| | | || || ||||| || || || || | Sbjct 1033027 CCACCACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGAC 1033086 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || |||||||||||||| | | |||| | || || || || || || Sbjct 1033087 AATGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGA 1033146 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||||||||| || |||||| ||| | | ||| | ||||| | | || || Sbjct 1033147 ATACCTTCTTTATCCTGGATTTTAGCTTTCACATTTTCGATAGTGTCCGATGGTTCGACT 1033206 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| ||||||||| ||||| ||||| Sbjct 1033207 TCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || || | |||||| || ||||| | ||||||| ||||| |||||||| || | | Sbjct 1032284 CCACCACGTAGACGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCGAT 1032343 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| || || | ||||||||||| | |||| | ||| || ||||| || || Sbjct 1032344 AAT-GTACGACCATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTGG 1032402 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || ||||| || ||| |||||| || | | ||| | || || | | || | Sbjct 1032403 AATTCCCTCTTTATC-CTGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCAA 1032461 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | ||||||||||||| ||||| || ||||| ||||| Sbjct 1032462 CGTCTAATGTGATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| ||||| ||||| | | || ||||||||||||||||| ||| | Sbjct 1032056 CCACCACGGAGACGTAAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGGAC 1032115 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | || || | ||| || |||| | |||| | || || || || || || Sbjct 1032116 AAAGTTCTTCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGGGA 1032175 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| |||||| ||||| | ||| | || || | | ||| || Sbjct 1032176 ATTCCCTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTATCAGATGGCTCGACT 1032235 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || |||||||| || ||||| ||||| Sbjct 1032236 TCCAATGTAATAGTTTTACCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || || ||||| || | ||| | | || || |||||||||||||| || | Sbjct 1032512 CCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGAC 1032571 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || ||||| || | | || | ||| || ||||| || || Sbjct 1032572 AATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGA 1032631 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| |||||| || | | ||| | ||| || | | ||||| Sbjct 1032632 ATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCACT 1032691 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||||||||||| |||||| |||||||||||||| Sbjct 1032692 TCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 >seq558 Length=611125 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 138385 CAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCG 138444 || ||||| |||| |||| || || || || | ||||| || |||||||||||||| Sbjct 303943 CAACCGCCGCGCAGTCGCAGTACCAAGTGAATAGTGGACTCTTTCTGAATGTTGTAGTCC 303884 Query 138445 CTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 | || || ||| ||||| || || || | | |||| | ||||| |||||||| Sbjct 303883 GCGAGCGTGCGTCCGTCGTCGAGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGC 303824 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || || |||||||| ||| || ||| | || | |||||| | | ||| Sbjct 303823 GGAATGCCCTCTTTGTCCTGGATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCC 303764 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || |||| ||| | | || || || || || || ||||| |||||||| Sbjct 303763 ACTTCGAGCGTTATGTTCTTGCCCGTGAGTGTCTTGACAAATATCTGCAT 303714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496254199263840