Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq1 158 1e-33
seq391 147 2e-30
seq558 82.4 7e-11
>seq1
Length=3593316
Score = 158 bits (174), Expect = 1e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || || || | ||| || | ||||| |||||||||||||| ||||||||||||
Sbjct 1033252 ATACCGCCACGTAGACGCAATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCG 1033311
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || | ||| ||||||||||| || || | |||||||||||||| || ||
Sbjct 1033312 GACAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGT 1033371
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|||||||||||||||||||||||||| ||| | ||| | |||||| || | |||
Sbjct 1033372 GGAATGCCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCGATGGTGTCCGATGGTTCG 1033431
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| | ||| | ||||| || || | |||||||| || ||||||||
Sbjct 1033432 ACTTCCAAAGTGATGGTTTTACCAGTCAATGTTTTTACGAAGATTTGCAT 1033481
Score = 136 bits (150), Expect = 4e-27
Identities = 170/231 (74%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171
|||| || || || | ||| || | ||| | || ||||| |||||||| |||||||||
Sbjct 1031598 TTCCACCACGAAGTCGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCG- 1031656
Query 45172 TGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229
||| | || || ||| |||||||||||||| || | ||||| || ||||| || ||
Sbjct 1031657 -GACAATGTTCGACCATCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGG 1031715
Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289
||||| |||||||| ||||| |||||| ||||| ||| | || || || | ||
Sbjct 1031716 TGGAATACCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCGATAGTATCCGATGGTTC 1031775
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| | || | ||||| ||||| | |||||||| |||||||||||
Sbjct 1031776 CACTTCCAAGGTGATGGTTTTACCGGTCAATGTTTTTACGAAAATTTGCAT 1031826
Score = 136 bits (150), Expect = 4e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| || ||||| | | ||| | ||| | || ||||| ||||| ||||| ||||||
Sbjct 1031825 ATTCCACCACGGAGACGAAGCACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAATCG 1031884
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| ||| ||||||||||| || ||| | ||||| |||||||| || ||
Sbjct 1031885 GATAAGGTACGGCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTGGT 1031944
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| ||||| ||||||||||| || ||| | ||| | || || || | ||||
Sbjct 1031945 GGAATACCTTCCTTATCTTGAATCTTGGCTTTTACATTTTCGATTGTATCCGATGGCTCG 1032004
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| | ||| | |||||| || ||||| || || || |||||||||||
Sbjct 1032005 ACTTCCAAAGTGATCGTTTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 1032054
Score = 136 bits (150), Expect = 4e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | || || | ||||| || ||||||||||| || || ||||||
Sbjct 1032053 ATACCACCACGGAGACGTAAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCG 1032112
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | ||| |||||||| ||||| || | |||||||||||||| || ||
Sbjct 1032113 GACAAAGTTCTTCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGG 1032172
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| || ||||| || || ||||| ||| | ||| | || || || | ||||
Sbjct 1032173 GGAATTCCCTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTATCAGATGGCTCG 1032232
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| | |||| ||||| ||||| |||||||| || |||||||||||
Sbjct 1032233 ACTTCCAATGTAATAGTTTTACCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282
Score = 134 bits (148), Expect = 1e-26
Identities = 175/240 (73%), Gaps = 4/240 (2%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| || || | | ||| || | ||| | || ||||| ||||| |||||||||||
Sbjct 1033024 ATTCCACCACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCC 1033083
Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
||| | || | ||| || | |||||| || || | |||||||||||||| || |
Sbjct 1033084 --GACAATGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTG 1033141
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288
| ||||| ||||||||||| || ||||| ||| | ||| | ||||| || | |
Sbjct 1033142 GTGGAATACCTTCTTTATCCTGGATTTTAGCTTTCACATTTTCGATAGTGTCCGATGGTT 1033201
Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348
||||||| | ||||| |||||||| || | ||||||||| ||||||||||| ||| ||
Sbjct 1033202 CGACTTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCATACCGCCAC 1033261
Score = 113 bits (124), Expect = 4e-20
Identities = 155/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--A 45185
||| || ||||| || || ||||| ||||| || || ||||| ||| | || | |
Sbjct 1032526 CAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCC--GACAATGTTCGGCCA 1032583
Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245
|| || | ||||| || ||| | ||||| ||||||||||| || ||||| ||||||||
Sbjct 1032584 TCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTTG 1032643
Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305
||||| ||||| |||| ||| | ||| || || | || ||||| | ||||
Sbjct 1032644 TCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCACTTCCAATGTAATG 1032703
Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || || | |||||| |||||||| |||||
Sbjct 1032704 GTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738
Score = 100 bits (110), Expect = 3e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || || || | ||| || | ||||| ||||| || |||||||| || |||||
Sbjct 1032281 ATACCACCACGTAGACGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCC 1032340
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || | ||| || |||||||| || || | ||||| ||||||||||| ||
Sbjct 1032341 GATAATGTACGACCATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGT 1032400
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| || |||||||| ||||||||| || | ||| | || || || | ||
Sbjct 1032401 GGAATTCCCTCTTTATCCTGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCA 1032460
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || | || | ||||| || || | ||||| || |||||||||||
Sbjct 1032461 ACGTCTAATGTGATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510
>seq391
Length=841353
Score = 147 bits (162), Expect = 2e-30
Identities = 174/231 (75%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172
|||||| | | || |||||| ||||||| |||||||||||||| || || ||||| |
Sbjct 250933 TCCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATC--T 250990
Query 45173 GACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
||| | | | ||||||| | ||| ||||| || | || || || || || || |||
Sbjct 250991 GACAATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGC 251050
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGC-TTCTACGGTGTCGGAAGACTC 45289
||||| ||||||||||| |||| |||| |||| ||| ||| | ||| ||| | |||
Sbjct 251051 GGAATCCCTTCTTTATCCTGAA-TTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTC 251109
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||||||| || |||| || || | |||||||||||||||||||||
Sbjct 251110 TACTTCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160
Score = 123 bits (136), Expect = 2e-23
Identities = 170/236 (72%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 45107 TTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATA 45166
|| ||| ||||| | |||| | ||||| || | ||| ||||| || |||||||| ||
Sbjct 251383 TTGTATACCTCCTCTAAGCCGTAGCACTAAGTGTAACGTCGATTCTTTCTGGATATTGTA 251442
Query 45167 ATCGCTGACG--GTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGG 45224
|| |||| ||| ||||||| || ||||||||||| || | || |||||||| ||
Sbjct 251443 GTC--TGACAAAGTTCTAGAATCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGTTGA 251500
Query 45225 TCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAA 45284
|| |||||||| ||||| ||||| |||||||| ||| | ||| | ||||| |
Sbjct 251501 TCAGGCGGAATTCCTTCCTTATCCTGAATTTTCGTTTTCACATTTTCAATTGTGTCAGTG 251560
Query 45285 GACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| || || || || | || |||| || |||| ||||||||||| || |||||
Sbjct 251561 GGTTCTACCTCAAGCGAAATATTTTTACCTGTTAATGTTTTTACAAATATCTGCAT 251616
Score = 105 bits (116), Expect = 6e-18
Identities = 154/213 (72%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACG--GTTTTAGAATCG 45188
||||| || | || ||||| || |||||||| || || |||| ||| |||||||
Sbjct 251179 CACTAAGTGTAATGTGGATTCTTTCTGGATATTGTAGTC--TGACAAAGTTCTAGAATCT 251236
Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248
|| || |||||||| || | || ||||| || ||||| |||||||| |||||||| ||
Sbjct 251237 TCTAACTGTTTTCCAGCAAAAATTAATCGCTGTTGGTCTGGCGGAATCCCTTCTTTGTCC 251296
Query 45249 TGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307
|||||||| || | | || || | |||||| | |||||||| | || | |
Sbjct 251297 TGAATTTTCATCTTTA-CACTCTCAATAGTGTCGTTGGGTTCGACTTCCAAAGATATATT 251355
Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| || |||| || |||||||||||||| ||
Sbjct 251356 TTTTCCTGTTAAGGTCTTTACAAAAATTTGTAT 251388
>seq558
Length=611125
Score = 82.4 bits (90), Expect = 7e-11
Identities = 114/157 (73%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245
||||| | || || || || | ||||| || |||||||||||||||||||| |||||
Sbjct 303868 TCGTCGAGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCGGAATGCCCTCTTTG 303809
Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
|| || || || ||||| |||| || | |||||| | || |||||||| || |
Sbjct 303808 TCCTGGATCTTAGCTTTGA-CGCTCTCGATCGTGTCGTTTGGGTCCACTTCGAGCGTTAT 303750
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
| ||||| || || || || ||||| || ||||||
Sbjct 303749 GTTCTTGCCCGTGAGTGTCTTGACAAATATCTGCATC 303713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451995730647120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |