Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 158 1e-33 seq391 147 2e-30 seq558 82.4 7e-11 >seq1 Length=3593316 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || | ||||| |||||||||||||| |||||||||||| Sbjct 1033252 ATACCGCCACGTAGACGCAATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCG 1033311 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||||||||| || || | |||||||||||||| || || Sbjct 1033312 GACAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGT 1033371 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||||||||||||||||||||| ||| | ||| | |||||| || | ||| Sbjct 1033372 GGAATGCCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCGATGGTGTCCGATGGTTCG 1033431 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | ||||| || || | |||||||| || |||||||| Sbjct 1033432 ACTTCCAAAGTGATGGTTTTACCAGTCAATGTTTTTACGAAGATTTGCAT 1033481 Score = 136 bits (150), Expect = 4e-27 Identities = 170/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||| || || || | ||| || | ||| | || ||||| |||||||| ||||||||| Sbjct 1031598 TTCCACCACGAAGTCGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCG- 1031656 Query 45172 TGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | || || ||| |||||||||||||| || | ||||| || ||||| || || Sbjct 1031657 -GACAATGTTCGACCATCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGG 1031715 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 ||||| |||||||| ||||| |||||| ||||| ||| | || || || | || Sbjct 1031716 TGGAATACCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCGATAGTATCCGATGGTTC 1031775 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | ||||| ||||| | |||||||| ||||||||||| Sbjct 1031776 CACTTCCAAGGTGATGGTTTTACCGGTCAATGTTTTTACGAAAATTTGCAT 1031826 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || ||||| | | ||| | ||| | || ||||| ||||| ||||| |||||| Sbjct 1031825 ATTCCACCACGGAGACGAAGCACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAATCG 1031884 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||||||||| || ||| | ||||| |||||||| || || Sbjct 1031885 GATAAGGTACGGCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTGGT 1031944 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| ||||||||||| || ||| | ||| | || || || | |||| Sbjct 1031945 GGAATACCTTCCTTATCTTGAATCTTGGCTTTTACATTTTCGATTGTATCCGATGGCTCG 1032004 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | |||||| || ||||| || || || ||||||||||| Sbjct 1032005 ACTTCCAAAGTGATCGTTTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 1032054 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | || || | ||||| || ||||||||||| || || |||||| Sbjct 1032053 ATACCACCACGGAGACGTAAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCG 1032112 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||||||| ||||| || | |||||||||||||| || || Sbjct 1032113 GACAAAGTTCTTCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGG 1032172 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||| || || ||||| ||| | ||| | || || || | |||| Sbjct 1032173 GGAATTCCCTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTATCAGATGGCTCG 1032232 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| ||||| ||||| |||||||| || ||||||||||| Sbjct 1032233 ACTTCCAATGTAATAGTTTTACCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282 Score = 134 bits (148), Expect = 1e-26 Identities = 175/240 (73%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || | | ||| || | ||| | || ||||| ||||| ||||||||||| Sbjct 1033024 ATTCCACCACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCC 1033083 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | || | ||| || | |||||| || || | |||||||||||||| || | Sbjct 1033084 --GACAATGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTG 1033141 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| ||||||||||| || ||||| ||| | ||| | ||||| || | | Sbjct 1033142 GTGGAATACCTTCTTTATCCTGGATTTTAGCTTTCACATTTTCGATAGTGTCCGATGGTT 1033201 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||||||| | ||||| |||||||| || | ||||||||| ||||||||||| ||| || Sbjct 1033202 CGACTTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCATACCGCCAC 1033261 Score = 113 bits (124), Expect = 4e-20 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--A 45185 ||| || ||||| || || ||||| ||||| || || ||||| ||| | || | | Sbjct 1032526 CAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCC--GACAATGTTCGGCCA 1032583 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | ||||| || ||| | ||||| ||||||||||| || ||||| |||||||| Sbjct 1032584 TCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTTG 1032643 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| ||||| |||| ||| | ||| || || | || ||||| | |||| Sbjct 1032644 TCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCACTTCCAATGTAATG 1032703 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | |||||| |||||||| ||||| Sbjct 1032704 GTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || | ||||| ||||| || |||||||| || ||||| Sbjct 1032281 ATACCACCACGTAGACGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCC 1032340 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || |||||||| || || | ||||| ||||||||||| || Sbjct 1032341 GATAATGTACGACCATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGT 1032400 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || |||||||| ||||||||| || | ||| | || || || | || Sbjct 1032401 GGAATTCCCTCTTTATCCTGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCA 1032460 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | ||||| || || | ||||| || ||||||||||| Sbjct 1032461 ACGTCTAATGTGATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510 >seq391 Length=841353 Score = 147 bits (162), Expect = 2e-30 Identities = 174/231 (75%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| | | || |||||| ||||||| |||||||||||||| || || ||||| | Sbjct 250933 TCCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATC--T 250990 Query 45173 GACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 ||| | | | ||||||| | ||| ||||| || | || || || || || || ||| Sbjct 250991 GACAATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGC 251050 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGC-TTCTACGGTGTCGGAAGACTC 45289 ||||| ||||||||||| |||| |||| |||| ||| ||| | ||| ||| | ||| Sbjct 251051 GGAATCCCTTCTTTATCCTGAA-TTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTC 251109 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||||| || |||| || || | ||||||||||||||||||||| Sbjct 251110 TACTTCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 Score = 123 bits (136), Expect = 2e-23 Identities = 170/236 (72%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 45107 TTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATA 45166 || ||| ||||| | |||| | ||||| || | ||| ||||| || |||||||| || Sbjct 251383 TTGTATACCTCCTCTAAGCCGTAGCACTAAGTGTAACGTCGATTCTTTCTGGATATTGTA 251442 Query 45167 ATCGCTGACG--GTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGG 45224 || |||| ||| ||||||| || ||||||||||| || | || |||||||| || Sbjct 251443 GTC--TGACAAAGTTCTAGAATCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGTTGA 251500 Query 45225 TCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAA 45284 || |||||||| ||||| ||||| |||||||| ||| | ||| | ||||| | Sbjct 251501 TCAGGCGGAATTCCTTCCTTATCCTGAATTTTCGTTTTCACATTTTCAATTGTGTCAGTG 251560 Query 45285 GACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || | || |||| || |||| ||||||||||| || ||||| Sbjct 251561 GGTTCTACCTCAAGCGAAATATTTTTACCTGTTAATGTTTTTACAAATATCTGCAT 251616 Score = 105 bits (116), Expect = 6e-18 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACG--GTTTTAGAATCG 45188 ||||| || | || ||||| || |||||||| || || |||| ||| ||||||| Sbjct 251179 CACTAAGTGTAATGTGGATTCTTTCTGGATATTGTAGTC--TGACAAAGTTCTAGAATCT 251236 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || || |||||||| || | || ||||| || ||||| |||||||| |||||||| || Sbjct 251237 TCTAACTGTTTTCCAGCAAAAATTAATCGCTGTTGGTCTGGCGGAATCCCTTCTTTGTCC 251296 Query 45249 TGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 |||||||| || | | || || | |||||| | |||||||| | || | | Sbjct 251297 TGAATTTTCATCTTTA-CACTCTCAATAGTGTCGTTGGGTTCGACTTCCAAAGATATATT 251355 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || |||| || |||||||||||||| || Sbjct 251356 TTTTCCTGTTAAGGTCTTTACAAAAATTTGTAT 251388 >seq558 Length=611125 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 ||||| | || || || || | ||||| || |||||||||||||||||||| ||||| Sbjct 303868 TCGTCGAGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCGGAATGCCCTCTTTG 303809 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || || || || ||||| |||| || | |||||| | || |||||||| || | Sbjct 303808 TCCTGGATCTTAGCTTTGA-CGCTCTCGATCGTGTCGTTTGGGTCCACTTCGAGCGTTAT 303750 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||||| || || || || ||||| || |||||| Sbjct 303749 GTTCTTGCCCGTGAGTGTCTTGACAAATATCTGCATC 303713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451995730647120