Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1 129 1e-24 seq768 127 5e-24 seq558 109 1e-18 seq391 87.8 4e-12 >seq1 Length=3593316 Score = 129 bits (142), Expect = 1e-24 Identities = 147/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||| |||||||| | |||||| || | |||||| ||||||||||||| ||||||||| Sbjct 1032086 GTCGATTCCTTTTGAATGTTGTAATCGGACAAAGTTCTTCCATCTTCCAATTGCTTTCCG 1032145 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 || ||||| | || ||||| || || |||||| ||| ||||| || ||| || || Sbjct 1032146 GCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCCTCTTTGTCCTGGAT-TTTGGCTTT 1032204 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || ||||| || || | || || || ||||| || || || ||||| || ||||| Sbjct 1032205 TACATTTTCGATCGTATCAGATGGCTCGACTTCCAATGTAATAGTTTTACCGGTAAGAGT 1032264 Query 199612 TTTCACAAAAATTTG 199626 ||| || |||||||| Sbjct 1032265 TTTGACGAAAATTTG 1032279 >seq768 Length=1243675 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||||| |||||||||||||||| ||||||||| || | || Sbjct 1130702 CGCAGCCGCAGCACCAAGTGGATCGTCGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTG 1130761 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || |||| |||||| ||||| || || ||||||||||||||||| ||| || Sbjct 1130762 CGCCCGTCATCCAACTGCTTCCCGGCAAAAATCAGACGCTGCTGGTCCGGCGGAATGCCC 1130821 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| || ||| |||| ||||| ||| || || || | Sbjct 1130822 TCCTTGTCCTGGATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACCTCAAGG 1130881 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||| |||||||| || ||||| || ||||| Sbjct 1130882 GTGATGTTCTTCCCCGTGAGCGTCTTCACGAAGATTTG 1130919 >seq558 Length=611125 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| ||| || | ||| | ||| ||||| || || | ||||||||| || | || Sbjct 303934 CGCAGTCGCAGTACCAAGTGAATAGTGGACTCTTTCTGAATGTTGTAGTCCGCGAGCGTG 303875 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || || |||||||| || || ||||| | |||||||||||||| ||| || Sbjct 303874 CGTCCGTCGTCGAGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCGGAATGCCC 303815 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| || ||| |||| ||||| ||| || || || | | Sbjct 303814 TCTTTGTCCTGGATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACTTCGAGC 303755 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||| |||||||| || || ||||| || || Sbjct 303754 GTTATGTTCTTGCCCGTGAGTGTCTTGACAAATATCTG 303717 >seq391 Length=841353 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || || | ||| || |||||||| | |||||| || | ||| |||| ||| || Sbjct 250952 ACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGACAATGTCCGCGAATCGTCA 251011 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 || |||||||| || || || | ||||| || || || ||| |||||| |||||| Sbjct 251012 AGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGGAATCCCTTCTTTATCCTGA 251071 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 || || |||||| ||| | ||| || ||| ||||| || | | || | || Sbjct 251072 ATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTACTTCGAGAGAAATATTTTTT 251131 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || | |||||| ||||||||||| Sbjct 251132 CCTGTCAAAGTTTTTACAAAAATTTG 251157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178901631278574