Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq768 140 4e-28 seq558 131 2e-25 seq391 86.0 7e-12 >seq768 Length=1243675 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| || | || |||||||||||| |||||||| | || |||||| || Sbjct 1130708 CGCAGCACCAAGTGGATCGTCGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGCCCG 1130767 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || | |||||| ||||| || |||| ||||||||||| | ||| | || ||||||| Sbjct 1130768 TCATCCAACTGCTTCCCGGCAAAAATCAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTG 1130827 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| |||| || | | ||||||| | | ||||| || | |||||| Sbjct 1130828 TCCTGGATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACCTCAAGGGTGATG 1130887 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || ||||| ||||| || || ||||||||||| Sbjct 1130888 TTCTTCCCCGTGAGCGTCTTCACGAAGATTTGCAT 1130922 >seq558 Length=611125 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || |||||||| | || ||||| |||||||||||||||| || || || Sbjct 303905 CTCTTTCTGAATGTTGTAGTCCGCGAGCGTGCGTCCGTCGTCGAGCTGCTTCCCCGCAAA 303846 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||| | ||| | || ||| |||||| |||||| |||| | Sbjct 303845 GATCAAGCGCTGCTGGTCCGGCGGAATGCCCTCTTTGTCCTGGATCTTAGCTTTGACGCT 303786 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||||| | | ||||| || | ||| ||| | |||||||| || || || || Sbjct 303785 CTCGATCGTGTCGTTTGGGTCCACTTCGAGCGTTATGTTCTTGCCCGTGAGTGTCTTGAC 303726 Query 46582 AAAGATTTGCAT 46593 ||| || ||||| Sbjct 303725 AAATATCTGCAT 303714 >seq391 Length=841353 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| || ||||||||||||||||| || |||||||| || ||||| || || Sbjct 250934 CCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGAC 250993 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || ||| ||||| || ||||| || || || || || ||||| || || | ||| Sbjct 250994 AATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGGA 251053 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || || ||| || ||| | || | | | | || ||| | | || || Sbjct 251054 ATCCCTTCTTTATCCTGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTACT 251113 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | | || |||| || |||| ||||| ||||| |||||||| Sbjct 251114 TCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | ||| | ||| | ||| || || ||||| |||||||||||| Sbjct 730826 CCTCCTCTAAGACGAAGCACTAAATGAATTGTGGATTCTTTCTGGATGTTGTAGTCGGAT 730885 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | |||||| | |||||| || ||||| || || || || | | ||||| || | || Sbjct 730886 AAAGTGCGGTTGTCGTCTAGTTGCTTACCAGCAAAAATAAGTCTTTGCTGATCCGGGGGA 730945 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| ||| || | |||| | | | | ||||| | | |||||| Sbjct 730946 ATTCCTTCTTTGTCTTGGATTTTGGTTTTGATGGACTCAATAGTGTCATTTGGTTCCACC 731005 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||| | || || || | ||||| || || || ||||| Sbjct 731006 TCCAGGGTAATGTTCTTCCCTGTTAATGTTTTCACGAAAATCTGCAT 731052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565229059435440