Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq335 196 5e-45 seq768 154 1e-32 seq558 116 4e-21 seq1 102 8e-17 seq391 95.1 1e-14 >seq335 Length=939964 Score = 196 bits (216), Expect = 5e-45 Identities = 368/524 (70%), Gaps = 18/524 (3%) Strand=Plus/Minus Query 132910 TGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCG 132969 |||| ||| ||||| | || || ||||||||||||||| | | ||||||| |||||| Sbjct 900291 TGCATGCCTTCGTCGCGCGAGATCAGTTCGTTGCTGAAACTGAGCCCGGGCAGCAGGCCG 900232 Query 132970 CGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAA-AAGAAGACGCCCTCGACGGC 133028 || || |||||||| || || ||| | |||| ||| || |||| ||| ||||| || Sbjct 900231 CGCTTCTTGAGCCAGAAGATCGCG-CAAAACGAGCCGCTGAACAAGATGCCTTCGACCGC 900173 Query 133029 CGCGAAA-GCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCG 133087 || ||| || | |||||| || ||| || | ||| ||| |||||| | || Sbjct 900172 -GCAAAACGCGAGCAGGCGTTCCGCGAGCGAG--TTCGAGCCTGT-GATCCACTTGACCG 900117 Query 133088 CCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT-TCGATGGCGTTCAACAAACGGAGT 133146 |||| || ||||| |||||| ||||| ||| ||||| ||| || ||| || || Sbjct 900116 CCCACTCCGCCTTGCGTTTGACCGCCGGCA-CGTGCTCGATTGCGCGCAGCAACCGCAGC 900058 Query 133147 TTCTCTTCCGA--GGAACGC-ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGT 133203 || || || | | ||| | |||||||||||| || ||| | |||||||| Sbjct 900057 TTTTCGTCGGCCTGCTGCGCGAGGTAGGTGTCGATCAGCAAGCTGTACGTCTCCGAGTGG 899998 Query 133204 ACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCT 133263 | ||| ||||| || | || || ||||||| || | || || ||||| ||| Sbjct 899997 ATGTTTTCCATCGCAACCTGGAACGCGTAAAACTCGCGGACAGCGGGCAGCTGCATTTC- 899939 Query 133264 TGAGCGAAACGCTC--GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGG 133321 || | ||| || | | ||||| ||| |||||||||||||| || |||||||| | Sbjct 899938 -GACCAAAAAGCGGCTGGCGAGATTCTCGAGCACGATGCCGTCGCTCGCCGCGAAAAACG 899880 Query 133322 CCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC-TCCCAGTCGCGCGTG 133380 | ||||||||||||||||| || ||||| ||| ||| ||||| ||||||||| | | Sbjct 899879 CGAGCACGTGCTTGATGAAGTGCCGCTCACCGTCCTTC-AGCGCGTCCCAGTCGTCCAAG 899821 Query 133381 TCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTC 133424 || |||||||| | |||||| |||||||||| || || || Sbjct 899820 TCGGCAGACAGGTCAATTTCCTCGGCGGTCCAAAAGGAGGCTTC 899777 >seq768 Length=1243675 Score = 154 bits (170), Expect = 1e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||||||||||| || | ||||||| | || || || | | | Sbjct 1130922 ATGCAAATCTTCGTGAAGACGCTCACGGGGAAGAACATCACCCTTGAGGTGGACCCAAAC 1130863 Query 38304 GACAGCGTGCAAACGCTT-AAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | || | |||| || |||| ||||| ||||| ||||| | ||||| Sbjct 1130862 GACA-CGATCGAGAGCGTCAAAGCTAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 1130804 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| || || || ||| |||| |||| |||||| ||| |||||||| Sbjct 1130803 GCAGCGTCTGATTTTTGCCGGGAAGCAGTTGGATGACGGGCGCACGCTCGCGGACTACAA 1130744 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCGC 38474 |||||||||||| ||||| | || ||||||||||| || | |||||| || Sbjct 1130743 CATCCAAAAGGAGTCGACGATCCACTTGGTGCTGCGGCTGCGTGGCGGCGGC 1130692 >seq558 Length=611125 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || ||||||||||| | ||| || |||| || || | | | Sbjct 303714 ATGCAGATATTTGTCAAGACACTCACGGGCAAGAACATAACGCTCGAAGTGGACCCAAAC 303773 Query 38304 GACAGCGTGCAAACGC-TTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | || | |||| || |||| ||||||||||| ||||| | ||||| Sbjct 303774 GACA-CGATCGAGAGCGTCAAAGCTAAGATCCAGGACAAAGAGGGCATTCCGCCGGACCA 303832 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||||| || ||||| ||||||| ||||| ||| |||||||| Sbjct 303833 GCAGCGCTTGATCTTTGCGGGGAAGCAGCTCGACGACGGACGCACGCTCGCGGACTACAA 303892 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || || || | || | || ||||| ||||| || | ||||| Sbjct 303893 CATTCAGAAAGAGTCCACTATTCACTTGGTACTGCGACTGCGCGGCGG 303940 >seq1 Length=3593316 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||||||||| | || || |||||||||||| | || || || | | Sbjct 1031827 AATGCAAATTTTCGTAAAAACATTGACCGGTAAAACCATCACCTTGGAAGTGGAACCATC 1031768 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | ||| | |||| |||||||| |||||||| || ||||| | || || Sbjct 1031767 GGATACTATCGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA 1031708 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || || ||||| |||| || | || || | ||| || || Sbjct 1031707 GCAGCGTTTGATCTTTGCCGGAAAACAATTGGAAGATGGTCGAACATTGTCCGATTATAA 1031648 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||| |||| | |||||||| |||| Sbjct 1031647 CATCCAAAAAGAATCGACATTACATTTGGTATTGCG 1031612 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || || ||||| || || | || |||||| | | Sbjct 1032282 ATGCAAATTTTCGTCAAAACTCTTACCGGTAAAACTATTACATTGGAAGTCGAGCCATCT 1032223 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | |||| ||||||| |||||||||||||||||| | || || Sbjct 1032222 GATACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAG 1032163 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || || || |||| || | | || | ||| |||||| Sbjct 1032162 CAACGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGAAGAACTTTGTCCGATTACAAC 1032103 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 || ||||||||| |||| |||||||||| Sbjct 1032102 ATTCAAAAGGAATCGACATTGCATTTGGT 1032074 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||||||||| | || || ||||||||||| | || ||||| | | Sbjct 1033481 ATGCAAATCTTCGTAAAAACATTGACTGGTAAAACCATCACTTTGGAAGTCGAACCATCG 1033422 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| |||||| ||||| | || ||||| || ||||| | || || Sbjct 1033421 GACACCATCGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGCATTCCACCAGATCAG 1033362 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || ||||| |||| || | || || | ||| || || Sbjct 1033361 CAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGTCCGATTATAAT 1033302 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||||||| | || |||||||||| ||||| | | ||||| Sbjct 1033301 ATTCAAAAGGAATCAACATTGCATTTGGTATTGCGTCTACGTGGCGG 1033255 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || || |||||||| || | || || || || | Sbjct 1032738 ATGCAGATTTTTGTCAAAACTTTGACTGGTAAAACCATTACATTGGAAGTGGAACCCTCG 1032679 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | || | ||||||| |||||||| |||||||| | ||||| Sbjct 1032678 GATACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGACCAG 1032619 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| ||| ||||||||||| || || | || || | || |||||| Sbjct 1032618 CAACGTTTGATTTTCGCTGGCAAACAGCTTGAAGATGGCCGAACATTGTCGGATTACAAC 1032559 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 || ||||| ||| |||| || ||| | || |||| || Sbjct 1032558 ATTCAAAAAGAATCGACACTTCATCTCGTATTGCGATT 1032521 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || ||||||||||| | ||||| || | | Sbjct 1032510 ATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATCACATTAGACGTTGAACCATCT 1032451 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | || | |||||| | || |||||||||||||| | ||||| Sbjct 1032450 GATACAATCGAAAATGTGAAGGCAAAAATTCAGGATAAAGAGGGAATTCCACCAGACCAG 1032391 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || ||||| | || || | || || | || |||||| Sbjct 1032390 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACATTATCGGATTACAAC 1032331 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| || | || |||||||||| ||||| Sbjct 1032330 ATCCAAAAAGAGTCAACTTTGCATTTGGTATTGCGT 1032295 >seq391 Length=841353 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || || || | ||| ||| | || || || | | Sbjct 731052 ATGCAGATTTTCGTGAAAACATTAACAGGGAAGAACATTACCCTGGAGGTGGAACCAAAT 730993 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | ||| ||||||| |||||||| ||||||||| | || || Sbjct 730992 GACACTATTGAGTCCATCAAAACCAAAATCCAAGACAAAGAAGGAATTCCCCCGGATCAG 730933 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | || |||| || || || || || |||||| | ||||| | |||||||||| Sbjct 730932 CAAAGACTTATTTTTGCTGGTAAGCAACTAGACGACAACCGCACTTTATCCGACTACAAC 730873 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || | ||||| ||||| ||| | ||||| || Sbjct 730872 ATCCAGAAAGAATCCACAATTCATTTAGTGCTTCGTCTTAGAGGAGG 730826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500164534644480