Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq569 194 2e-44 seq1212 111 2e-19 seq768 100 4e-16 >seq569 Length=351751 Score = 194 bits (214), Expect = 2e-44 Identities = 464/695 (67%), Gaps = 10/695 (1%) Strand=Plus/Plus Query 112299 CAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAAT 112358 |||| || || ||||| ||||||||| | |||||||| ||||| | || ||| Sbjct 123858 CAAATTGAAACCGGTACTCCATATATGTTATACAAAGATCATTGTAATCGTAAATCAAAT 123917 Query 112359 CAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACA 112418 ||| | ||| | ||| || || |||| || || ||||||||||| | |||| | || Sbjct 123918 CAACAAAATCTTGGTACAATTAAATGTTCAAATCTTTGTACAGAAATTGTTGAATATTCA 123977 Query 112419 GACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT 112478 |||||| ||| || ||||| | ||||| || | | || | ||| ||| Sbjct 123978 TCACCAGATGAAGTGGCCGTATGTAATTTAGCATCGATTTCATTACCACGTTTTGTTGAT 124037 Query 112479 CCAGAGACAAAGACA-TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAA 112537 | | | || | || ||||||||||||||||| | || || ||| | ||||| Sbjct 124038 CAAAA-ACTCGGTCAATTTGATTATGAAAAACTTAAAAAAATTGTTAAAGTAATGACAAA 124096 Query 112538 AAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATC 112594 ||| |||||| | |||||||| | |||| ||| || | ||||| | | || Sbjct 124097 AAATTTAAACAAAATTATTGATGGTAATTATTATCCATTACCGGAGACAAGACTT---TC 124153 Query 112595 TAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCT 112654 ||| | | || || || ||||| || ||||| |||||| | || |||| ||||| ||| Sbjct 124154 AAATTTACGTCATCGACCTATTGGACTTGGTGTACAAGGTTTAGCCGATGCATTCAGTCT 124213 Query 112655 TTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGAC 112714 | || | ||| ||| ||||| || |||| ||| | |||||||| || Sbjct 124214 ATTACGTTATCCATATGAAAGTTTGGAAGCAAAAAAAATGAATATCCAAATATTTGAAAC 124273 Query 112715 AATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGA 112774 ||| ||| | | || | || || |||| || || ||||| ||||||||||||| Sbjct 124274 AATTTATTATGGTGCATTGGAAGCAAGTTGTGAATTAGCAGAACAATATGGTCCATATGA 124333 Query 112775 AACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA 112834 ||| | | | || || |||| ||| |||| | || |||| |||||||||| | || | Sbjct 124334 AACTTATCAAGGATCACCAGTATCAAAAGGTATTCTACAATATGATATGTGGAATCGT-A 124392 Query 112835 GACCAAGC-TTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTC 112893 ||||| | || | | ||| | | || ||| || | | ||| ||| Sbjct 124393 CACCAACCGATCTTTGGAATTGGTCTGAATTGAAAGAAAAAATTTCCAAATATGGTATTC 124452 Query 112894 GTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATA 112953 | || ||| | ||| | ||||||||||||||||| || ||||||||||| | ||||||| Sbjct 124453 GAAATAGTTTATTGGTTGCACCAATGCCAACAGCATCAACCGCACAAATTCTTGGTAATA 124512 Query 112954 ATGAATGCTTTGAACCCTACACGACGAACATCTAT 112988 |||||| |||||||| || || | || |||||| Sbjct 124513 ATGAATCATTTGAACCATATACATCAAATATCTAT 124547 >seq1212 Length=1133891 Score = 111 bits (122), Expect = 2e-19 Identities = 269/405 (66%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| ||||| || | || | || | |||||||||||| || ||||| || ||| Sbjct 869870 CGATCAAAACGACCAGGCCTTAGCAATGCTTTATCAAGGATATCTACACGATTAGTAGCG 869929 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 || | ||||||| || | ||| ||||||||||| || || | || || Sbjct 869930 GCTAACACAACAACGTTTGAAGCCGTATTGAAACCATCCATTTCGACTAATAATTGATTT 869989 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 16064 | || | |||| ||||| || | |||| || ||| |||| ||| || Sbjct 869990 AATGTGTTTTCCTGTTCACTATGACCACCTATACTACGGCCACCACGTTTACGTCCAACA 870049 Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124 ||||| || |||||||| || | |||||||| ||||| || || | | |||| | | Sbjct 870050 GCATCGATTTCATCAATAAATAAAATGCATGGAGCATTTTTACGTGCCATTGCAAACATA 870109 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 16183 || || ||||| | || |||||||||||||| || | ||| | | | || ||| Sbjct 870110 TCTCGAACACGTGAAGGACCAACACCAACAAACATTTCTAGAAACTCGGAACCAGATACA 870169 Query 16184 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 | |||||| || || |||| |||||| || | ||| ||| | | ||| || || || Sbjct 870170 GT-GATGAAAGGCACTTTAGCTTCACCGGCTGTTGCTTTGGCCAACAAAGTTTTGCCAGT 870228 Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 ||| || || | || || || ||| |||||| || || || Sbjct 870229 ACCAGGTGGTCCAGTTAGAAGTGCGCCTTTTGGAATTTTAGCACC 870273 Score = 100 bits (110), Expect = 4e-16 Identities = 264/397 (66%), Gaps = 6/397 (2%) Strand=Plus/Plus Query 13597 TCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTT-AAGGAGTCACCACAAAACGAG 13655 |||||||||| | | ||||| ||| |||||| || ||| ||| ||| ||| || Sbjct 1007892 TCTATCAAGCAAGTACTTCAGAATTGTATGGTAAAGTACAAGAAGT-ACCGCAACGTGAA 1007950 Query 13656 GAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTC 13715 ||||| || || ||||| || ||||| || |||| || ||||| | Sbjct 1007951 ACAACACCATTTTATCCACGATCTCCATACGGTGTTGCAAAATCATTTGCCTATTGGATT 1008010 Query 13716 GTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAACCAT 13775 || ||||| || || |||| | | ||||||| | || || || ||||| ||| Sbjct 1008011 GTTGTCAATTATCGTGAAGCTTATGAAATGTTTGCCGTCAATGGTATTCTATTCAATCAT 1008070 Query 13776 GAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTAC-CGAGG-GTATCAAAC 13833 |||||||| ||||| |||| | ||||| || |||||||| || || || ||| Sbjct 1008071 GAATCACCTAGACGTGGTGAAACATTTGTCACACGTAAGATTACACGTGGTGTGGCAA-- 1008128 Query 13834 AAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATT 13893 |||| | | | | || ||||| ||||||||||| | | | | |||||| Sbjct 1008129 AAATTGTTCTTAATCGACAAGAATTCATCGAATTGGGTAATTTGGATTCAAAACGAGATT 1008188 Query 13894 GGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCG 13953 |||| || || || ||||||||||| |||||| | ||| | |||||||| | | | Sbjct 1008189 GGGGCCATGCACGTGATTATGTTGAAGCCATGTGGTTAATGTTACAACAAGAAAATCCGG 1008248 Query 13954 ACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGT 13990 | || | ||| | ||||| ||||| | |||||||| Sbjct 1008249 AAGATTTTGTCATTGCAACCGGTGAAGCACATTCAGT 1008285 >seq768 Length=1243675 Score = 100 bits (110), Expect = 4e-16 Identities = 326/499 (65%), Gaps = 17/499 (3%) Strand=Plus/Plus Query 175839 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 175898 ||||||| ||||| || || | ||||||||||| | |||| | |||| ||||| Sbjct 748570 AACCCGTGCCGATGCCTTCCGCGCCGTTCACGAGCAGTTGCGGGATTACGGGCACGTAGA 748629 Query 175899 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCT--CT 175956 | | |||||| ||||| ||||| | |||| || | || || ||| || Sbjct 748630 ACTTTGGCTCGATGGGCACGTTGTCGTCGTTTTGGTAGTCCAGCAGCGGCTCGTCTTCCT 748689 Query 175957 --CGGATCAAAGATCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGA 176014 |||| || || | ||| | | || | ||||| || |||||||| | ||| Sbjct 748690 GCCGGAACAT-GAAC---CGGCAAACGTTCGACAGCTTCGTGAAGATATAGCGCGTCGCG 748745 Query 176015 GACGCATCCTTACCACCCA---TGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGA 176071 ||||| || || ||| || ||| | ||||||||||| ||||||||||| || Sbjct 748746 GACGCGTCGCGCCCGCCCTCTTTGCGAC---TGCCAAACTGACCGCACGGCTCAAGCAGG 748802 Query 176072 TTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAG 176131 || | ||||| | || | | | | | ||||| || || | ||| | ||| | || Sbjct 748803 TTCAGGTTGTTCGTTCCGACGAACTGCTGCGCCATGTTCACGACCGTCTGCGCAATCGAT 748862 Query 176132 ACTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTC 176191 |||| ||||||||||| || |||||||| | || ||||||||||| ||| Sbjct 748863 TCTTCGCCGTGGTGGTAGCTGCTGACGTCTGCGACGTAGCTTGCGAACTGCGCCACCTTC 748922 Query 176192 ATCTC--ATC-CTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGC 176248 || || | | | ||| ||||| | ||| |||||| || ||||| |||| ||| Sbjct 748923 ATTTCCGAGCGCACGAGGTTCTTTTTGAACGCGCCGTACAGCACTTTGCGCTGCGCCGGC 748982 Query 176249 TTGAGACCATCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACG 176308 || || || ||| |||||| | || || |||| || ||| | ||| || ||| Sbjct 748983 TTCAGCCCGTCCACCATGTTCGGAATCGAGCGCTGCACGTCGTACCGACTAAACAGCACG 749042 Query 176309 AGGTCCTTGTGTACAAAGT 176327 || ||||||| | ||||| Sbjct 749043 AGCTCCTTGTTGATAAAGT 749061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620732142231840