Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq1101 109 6e-19
seq1 100 3e-16
seq1212 86.0 7e-12
seq757 86.0 7e-12
>seq1101
Length=1082900
Score = 109 bits (120), Expect = 6e-19
Identities = 290/439 (66%), Gaps = 7/439 (2%)
Strand=Plus/Minus
Query 110608 TCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGA 110667
|| || || ||||| |||| ||||||||||||| || |||| | || || ||||
Sbjct 175459 TCTACTCTTTTCATAAACAAATCAGGAATCCACAATGCGTAGAACAAATCCCGAGCACGA 175400
Query 110668 GCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCAT 110727
|| ||||||| || || || ||| || || || || | |||||| | ||||||
Sbjct 175399 GCTTCTTCATGTCCGTGATTTTTTTTTAGTTCTAAGAATTCGAAAATATCCAAATGCCAT 175340
Query 110728 GGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGT 110784
|| || ||||| || || | | ||||| || | ||| | |||| ||||| ||
Sbjct 175339 GGCTCCAGATATACTGCAAAGCCGCCCTTTCGTCTTCCACCACCTTGGTCGACATAACGG 175280
Query 110785 GCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCC 110844
|| || ||||||| || |||||||||| |||| || | | ||||||||||||
Sbjct 175279 GCGGTTTCATTGAAAACTTTGAGCATAGGTATAACACCGTTGCTAATACCATTTGTACCT 175220
Query 110845 CTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCAC 110904
|||| | | | || || || | || ||| | |||| ||||| || |
Sbjct 175219 TGAATTTCAGTCCCGTGTGCCCGTATTTTATGTATAGCTAGCCCAACTCCACCTGCGTAT 175160
Query 110905 TTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTG 110964
|||||||| ||| || | | | | ||| |||||| || ||||| ||||| | |||
Sbjct 175159 TTACTAATAATTGCGCATTGTTTCAACGTATTATAAATTCCGTCAATTGAATCCG-ATTG 175101
Query 110965 --TTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTG 111022
|| |||| | | | || | ||| |||||| | ||| | ||||| || ||||
Sbjct 175100 CATTTGCAA-CAAATAACAGCTACTCATTTGAGGAAAGCGAGTTGCGGCATTAAACAGTG 175042
Query 111023 TAGGTGTCGCATGAATGAA 111041
| || || || ||||||||
Sbjct 175041 TGGGAGTTGCGTGAATGAA 175023
>seq1
Length=3593316
Score = 100 bits (110), Expect = 3e-16
Identities = 96/123 (78%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 109725 AAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTC 109784
|||||| |||| ||| |||| ||| || ||||| || || ||||||| | ||||
Sbjct 3537853 AAATTCTCCAGAAAGAACACGTCTTGTGTATATATTAGTTGTATAAGGTTCGATAGACTC 3537794
Query 109785 ATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844
||||||||| || ||||||||||| |||||||| ||||| ||||||| || | ||| ||
Sbjct 3537793 ATTGTTGCCAAGAATTTGTGCAGTCGAAGCTGTTGGCATTGGAGCCACAAGCAAACTATT 3537734
Query 109845 TCG 109847
|||
Sbjct 3537733 TCG 3537731
>seq1212
Length=1133891
Score = 86.0 bits (94), Expect = 7e-12
Identities = 130/180 (72%), Gaps = 4/180 (2%)
Strand=Plus/Plus
Query 31328 CGAGATTGGGGTCATGCGAAGGACTACGTGGAGGCCATGTGGCTCATGCTTCAACAAGAA 31387
||||||||||| ||||| || || || || ||||||||| | ||| | |||||||||
Sbjct 1008182 CGAGATTGGGGCCATGCACGTGATTATGTTGAAGCCATGTGGTTAATGTTACAACAAGAA 1008241
Query 31388 CGTCCAGATGATTATGTCGTCGCAACAGGTAAATCACATTCTGTACGGGAGTTCATAGAA 31447
||| || |||| |||| | ||||| ||| || ||||||| || || || || | | |
Sbjct 1008242 AATCCGGAAGATTTTGTCATTGCAACCGGTGAAGCACATTCAGTTCGTGAATTTGTCG-A 1008300
Query 31448 ATCGCCGTACACA-AGATGGGCA-AGAAGATCGTTTGGTCAGGGAAAGGTCTAAATGGAG 31505
||| | | || | | || | | |||| ||| ||||| ||| || ||||| |||| ||
Sbjct 1008301 ATCAGCTTTCAAACATATTGATAGAGAA-ATCATTTGGGAAGGTAATGGTCTTAATGAAG 1008359
>seq757
Length=524386
Score = 86.0 bits (94), Expect = 7e-12
Identities = 119/167 (71%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489
||||| || ||||||||||| ||| | | ||| | ||| || || | ||||| |||
Sbjct 431765 TTACCTCGAAGTGGAAATACTCCAAATTTATCACGACCAACTACACCTAATCCAGCAACA 431824
Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGTGCC 168549
| |||| ||| || |||||||| || || | || |||||||| | || | |
Sbjct 431825 ACAAGAGATTTGGCAGAATCACCTTCAGTTAGAATTAGTGTACAATCGATTGAGTTTTTA 431884
Query 168550 GTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGTGATCTT 168596
|| ||||| | ||| ||||| |||| ||| ||||||||||| | |||
Sbjct 431885 GTTCCAGCATCGTTTGCATCCTCCAGTTTAGGGATACCAGTAAGCTT 431931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588966267171600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |