Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1101 109 6e-19 seq1 100 3e-16 seq1212 86.0 7e-12 seq757 86.0 7e-12 >seq1101 Length=1082900 Score = 109 bits (120), Expect = 6e-19 Identities = 290/439 (66%), Gaps = 7/439 (2%) Strand=Plus/Minus Query 110608 TCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGA 110667 || || || ||||| |||| ||||||||||||| || |||| | || || |||| Sbjct 175459 TCTACTCTTTTCATAAACAAATCAGGAATCCACAATGCGTAGAACAAATCCCGAGCACGA 175400 Query 110668 GCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCAT 110727 || ||||||| || || || ||| || || || || | |||||| | |||||| Sbjct 175399 GCTTCTTCATGTCCGTGATTTTTTTTTAGTTCTAAGAATTCGAAAATATCCAAATGCCAT 175340 Query 110728 GGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGT 110784 || || ||||| || || | | ||||| || | ||| | |||| ||||| || Sbjct 175339 GGCTCCAGATATACTGCAAAGCCGCCCTTTCGTCTTCCACCACCTTGGTCGACATAACGG 175280 Query 110785 GCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCC 110844 || || ||||||| || |||||||||| |||| || | | |||||||||||| Sbjct 175279 GCGGTTTCATTGAAAACTTTGAGCATAGGTATAACACCGTTGCTAATACCATTTGTACCT 175220 Query 110845 CTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCAC 110904 |||| | | | || || || | || ||| | |||| ||||| || | Sbjct 175219 TGAATTTCAGTCCCGTGTGCCCGTATTTTATGTATAGCTAGCCCAACTCCACCTGCGTAT 175160 Query 110905 TTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTG 110964 |||||||| ||| || | | | | ||| |||||| || ||||| ||||| | ||| Sbjct 175159 TTACTAATAATTGCGCATTGTTTCAACGTATTATAAATTCCGTCAATTGAATCCG-ATTG 175101 Query 110965 --TTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTG 111022 || |||| | | | || | ||| |||||| | ||| | ||||| || |||| Sbjct 175100 CATTTGCAA-CAAATAACAGCTACTCATTTGAGGAAAGCGAGTTGCGGCATTAAACAGTG 175042 Query 111023 TAGGTGTCGCATGAATGAA 111041 | || || || |||||||| Sbjct 175041 TGGGAGTTGCGTGAATGAA 175023 >seq1 Length=3593316 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 109725 AAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTC 109784 |||||| |||| ||| |||| ||| || ||||| || || ||||||| | |||| Sbjct 3537853 AAATTCTCCAGAAAGAACACGTCTTGTGTATATATTAGTTGTATAAGGTTCGATAGACTC 3537794 Query 109785 ATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844 ||||||||| || ||||||||||| |||||||| ||||| ||||||| || | ||| || Sbjct 3537793 ATTGTTGCCAAGAATTTGTGCAGTCGAAGCTGTTGGCATTGGAGCCACAAGCAAACTATT 3537734 Query 109845 TCG 109847 ||| Sbjct 3537733 TCG 3537731 >seq1212 Length=1133891 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 31328 CGAGATTGGGGTCATGCGAAGGACTACGTGGAGGCCATGTGGCTCATGCTTCAACAAGAA 31387 ||||||||||| ||||| || || || || ||||||||| | ||| | ||||||||| Sbjct 1008182 CGAGATTGGGGCCATGCACGTGATTATGTTGAAGCCATGTGGTTAATGTTACAACAAGAA 1008241 Query 31388 CGTCCAGATGATTATGTCGTCGCAACAGGTAAATCACATTCTGTACGGGAGTTCATAGAA 31447 ||| || |||| |||| | ||||| ||| || ||||||| || || || || | | | Sbjct 1008242 AATCCGGAAGATTTTGTCATTGCAACCGGTGAAGCACATTCAGTTCGTGAATTTGTCG-A 1008300 Query 31448 ATCGCCGTACACA-AGATGGGCA-AGAAGATCGTTTGGTCAGGGAAAGGTCTAAATGGAG 31505 ||| | | || | | || | | |||| ||| ||||| ||| || ||||| |||| || Sbjct 1008301 ATCAGCTTTCAAACATATTGATAGAGAA-ATCATTTGGGAAGGTAATGGTCTTAATGAAG 1008359 >seq757 Length=524386 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 ||||| || ||||||||||| ||| | | ||| | ||| || || | ||||| ||| Sbjct 431765 TTACCTCGAAGTGGAAATACTCCAAATTTATCACGACCAACTACACCTAATCCAGCAACA 431824 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGTGCC 168549 | |||| ||| || |||||||| || || | || |||||||| | || | | Sbjct 431825 ACAAGAGATTTGGCAGAATCACCTTCAGTTAGAATTAGTGTACAATCGATTGAGTTTTTA 431884 Query 168550 GTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGTGATCTT 168596 || ||||| | ||| ||||| |||| ||| ||||||||||| | ||| Sbjct 431885 GTTCCAGCATCGTTTGCATCCTCCAGTTTAGGGATACCAGTAAGCTT 431931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588966267171600