Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq569 156 5e-33 seq1212 116 4e-21 seq768 84.2 3e-11 >seq569 Length=351751 Score = 156 bits (172), Expect = 5e-33 Identities = 425/641 (66%), Gaps = 16/641 (2%) Strand=Plus/Minus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 |||||| || | || || |||||||| ||||||||||||| | ||||||||||| || Sbjct 124547 ATAGATATTTGATGTATATGGTTCAAATGATTCATTATTACCAAGAATTTGTGCGGTTGA 124488 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053 ||||||||||||||||| | ||| | ||| || |||| ||| | || || ||| Sbjct 124487 TGCTGTTGGCATTGGTGCAACCAATAAACTATTTCGAATACCATATTTGGAAATTTTTTC 124428 Query 106054 CTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGA 106111 || | || ||| | | || | | ||||| | || | |||||||||| |||| Sbjct 124427 TTTCAATTCAGACCAATTCCAAAGATCGG-TTGGTGT-ACGATTCCACATATCATATTGT 124370 Query 106112 AGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCC 106171 || | |||| || || || || | | | || ||||| | ||| | ||| || Sbjct 124369 AGAATACCTTTTGATACTGGTGATCCTTGATAAGTTTCATATGGACCATATTGTTCTGCT 124310 Query 106172 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231 |||||||| || || |||| | | | ||| || |||||||| || | |||||| Sbjct 124309 AATTCACAACTTGCTTCCAATGCACCATAATAAATTGTTTCAAATATTTGGATATTCATT 124250 Query 106232 TCCTTGGCTTC--ATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 106289 | || ||||| | || ||| ||| || || | | | | ||| |||| || | || Sbjct 124249 TTTTTTGCTTCCAAACTT--TCATATGGATAACGTAATAGACTGAATGCATCGGCTAAAC 124192 Query 106290 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---A 106346 |||| ||||| | |||||||||| || || | ||| || || | |||| | Sbjct 124191 CTTGTACACCAAGTCCAATAGGTCGATGACGTAAATTTGAAAGTCTTG---TCTCCGGTA 124135 Query 106347 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 106406 |||||| |||| | ||||| | | ||||| |||||| || | | || |||| Sbjct 124134 ATGGATAATAATTACCATCAATAATTTTGTTTAAATTTTTTGTCATTACTTTAACAATTT 124075 Query 106407 CATGAAGTTTTTCATAATCAAA-AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCG 106465 | |||||||||||||||||| | ||||| | || || ||| | ||| | | Sbjct 124074 TTTTAAGTTTTTCATAATCAAATTGACCGAGT-TTTTGATCAACAAAACGTGGTAATGAA 124016 Query 106466 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 106525 || ||||| ||||| || || ||| ||||| || || || | |||||||||| Sbjct 124015 ATCGATGCTAAATTACATACGGCCACTTCATCTGGTGATGAATATTCAACAATTTCTGTA 123956 Query 106526 CACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 || | || |||| ||||| || || | ||| | ||| || Sbjct 123955 CAAAGATTTGAACATTTAATTGTACCAAGATTTTGTTGATT 123915 >seq1212 Length=1133891 Score = 116 bits (128), Expect = 4e-21 Identities = 247/366 (67%), Gaps = 2/366 (1%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 |||||||| ||||| || | || | || | |||||||||||| || ||||| || ||| Sbjct 869870 CGATCAAAACGACCAGGCCTTAGCAATGCTTTATCAAGGATATCTACACGATTAGTAGCG 869929 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | ||||||| || | ||| ||||||||||| || || | ||| || Sbjct 869930 GCTAACACAACAACGTTTGAAGCCGTATTGAAACCATCCATTTCGACTAATAATTGATTT 869989 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9371 | || | |||| ||||| || | |||| || ||| |||| ||| || Sbjct 869990 AATGTGTTTTCCTGTTCACTATGACCACCTATACTACGGCCACCACGTTTACGTCCAACA 870049 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 ||||| || |||||||| || | ||| ||||| ||||| || || ||| |||| | | Sbjct 870050 GCATCGATTTCATCAATAAATAAAATGCATGGAGCATTTTTACGTGCCATTGCAAACATA 870109 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 9490 || ||||| | | | || |||||||||||||| || | ||| | | | || ||| Sbjct 870110 TCTCGAACACGTGAAGGACCAACACCAACAAACATTTCTAGAAACTCGGAACCAGATACA 870169 Query 9491 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | |||||| || || |||| |||||| || | ||| ||| | | ||| || || || Sbjct 870170 GT-GATGAAAGGCACTTTAGCTTCACCGGCTGTTGCTTTGGCCAACAAAGTTTTGCCAGT 870228 Query 9551 ACCTGG 9556 ||| || Sbjct 870229 ACCAGG 870234 Score = 113 bits (124), Expect = 5e-20 Identities = 267/397 (67%), Gaps = 6/397 (2%) Strand=Plus/Plus Query 6904 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTT-AAGGAGTCACCACAAAACGAG 6962 |||||||||| | | ||||| ||| |||||| || ||| ||| ||| ||| || Sbjct 1007892 TCTATCAAGCAAGTACTTCAGAATTGTATGGTAAAGTACAAGAAGT-ACCGCAACGTGAA 1007950 Query 6963 GAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTC 7022 ||||| || || ||||| || ||||| || |||| || ||||| | Sbjct 1007951 ACAACACCATTTTATCCACGATCTCCATACGGTGTTGCAAAATCATTTGCCTATTGGATT 1008010 Query 7023 GTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCAT 7082 || ||||| || || |||| | | ||||||| | || || || ||||| ||| Sbjct 1008011 GTTGTCAATTATCGTGAAGCTTATGAAATGTTTGCCGTCAATGGTATTCTATTCAATCAT 1008070 Query 7083 GAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTAC-CGAGG-GTATCAAAC 7140 |||||||| ||||| |||| | ||||||||| |||||||| || || || ||| Sbjct 1008071 GAATCACCTAGACGTGGTGAAACATTTGTCACACGTAAGATTACACGTGGTGTGGCAA-- 1008128 Query 7141 AAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATT 7200 |||| | | | | || ||||| ||||||||||| | | | | |||||| Sbjct 1008129 AAATTGTTCTTAATCGACAAGAATTCATCGAATTGGGTAATTTGGATTCAAAACGAGATT 1008188 Query 7201 GGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAGCCG 7260 |||| || || || |||||||||||||||||| | ||| | |||||||| | | | Sbjct 1008189 GGGGCCATGCACGTGATTATGTTGAAGCCATGTGGTTAATGTTACAACAAGAAAATCCGG 1008248 Query 7261 ACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGT 7297 | || | ||| | ||||| ||||| | |||||||| Sbjct 1008249 AAGATTTTGTCATTGCAACCGGTGAAGCACATTCAGT 1008285 >seq768 Length=1243675 Score = 84.2 bits (92), Expect = 3e-11 Identities = 171/250 (68%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 168495 CCAAATTGACCACACGGTTCAAGAAGGTTAATGTTGTTTGAACCCGTGTAGTCGTTTGCC 168554 ||||| ||||| ||||| ||||| ||||| | |||||| | || | | | | ||| Sbjct 748776 CCAAACTGACCGCACGGCTCAAGCAGGTTCAGGTTGTTCGTTCCGACGAACTGCTGCGCC 748835 Query 168555 AACTTAACAATCGTGTCCGCTAAGGATACTTCACCATGGTGGTAC--GCAGACTTGTCCG 168612 | || || | ||| | ||| | ||| |||| || |||||||| || ||| ||| | Sbjct 748836 ATGTTCACGACCGTCTGCGCAATCGATTCTTCGCCGTGGTGGTAGCTGCTGAC--GTCTG 748893 Query 168613 CGACATATGCCGCCAGTTGTGCCACCTTCATTTC--ATC-CTTGAGATTCTTATGGAAGC 168669 |||| || || | || |||||||||||||| | | | ||| ||||| | ||| Sbjct 748894 CGACGTAGCTTGCGAACTGCGCCACCTTCATTTCCGAGCGCACGAGGTTCTTTTTGAACG 748953 Query 168670 AAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACCATCCGCCATATGGGCAATAGAGC 168729 | |||| |||||| | ||| | ||||| || || ||| |||| | | ||| |||| Sbjct 748954 CGCCGTACAGCACTTTGCGCTGCGCCGGCTTCAGCCCGTCCACCATGTTCGGAATCGAGC 749013 Query 168730 GCTTCAAGTC 168739 ||| || ||| Sbjct 749014 GCTGCACGTC 749023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589971050567280