Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 168 1e-36 seq391 118 2e-21 seq558 114 3e-20 >seq1 Length=3593316 Score = 168 bits (186), Expect = 1e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 || ||| || || ||||| || || ||||||||||| |||||||| | | |||| || Sbjct 1032523 TCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGACAATGTTCGGCC 1032582 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||| ||||| || || ||||| || | ||||| |||||||| ||||| |||||||| Sbjct 1032583 ATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTT 1032642 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 |||||| ||||| |||||| || |||||||| ||||| ||||||||| | |||| Sbjct 1032643 GTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCACTTCCAATGTAAT 1032702 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||||||||| || || | ||||| Sbjct 1032703 GGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| |||||||| ||||| ||||| | | |||| ||||||||||| || ||||| Sbjct 1033057 GTGGATTCTTTTTGTATATTATAATCCGACAATGTTCGGCCATCTTCGAGTTGTTTACCA 1033116 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | |||||| || ||||| ||||| |||||||| || || ||||| || Sbjct 1033117 GCAAAGATCAATCGTTGCTGATCTGGTGGAATACCTTCTTTATCCTGGATTTTAGCTTTC 1033176 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || || |||||||| ||| ||||| | |||| || || || ||||||||| Sbjct 1033177 ACATTTTCGATAGTGTCCGATGGTTCGACTTCCAAAGTAATGGTTTTGCCAGTCAAAGTT 1033236 Query 195124 TTTACGAACACTTGCAT 195140 |||||||| | |||||| Sbjct 1033237 TTTACGAAAATTTGCAT 1033253 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || ||||||||||| ||||||| | ||| | |||||||| | || ||||| Sbjct 1033285 GTTGATTCCTTTTGAATATTATAATCGGACAAAGTACGACCATCTTCCAATTGTTTACCA 1033344 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | |||||| || ||||| |||||||||||||| ||||||||||| || Sbjct 1033345 GCAAAGATCAATCGTTGCTGATCTGGTGGAATGCCTTCTTTATCTTGAATTTTGGCTTTA 1033404 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || ||||||||||| ||| ||||| | || | || || || ||||| ||| Sbjct 1033405 ACATTTTCGATGGTGTCCGATGGTTCGACTTCCAAAGTGATGGTTTTACCAGTCAATGTT 1033464 Query 195124 TTTACGAACACTTGCAT 195140 |||||||| | |||||| Sbjct 1033465 TTTACGAAGATTTGCAT 1033481 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||| || | || | || || |||||||| || || ||||||| | |||| Sbjct 1031609 AGTCGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCGGACAATGTTCGA 1031668 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | || || || || ||||| | || || || ||||| ||||| |||||| Sbjct 1031669 CCATCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCT 1031728 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| |||||| ||||| || || || || ||||| ||||||||| | ||| Sbjct 1031729 TTGTCTTGGATTTTTGCTTTGACATTTTCGATAGTATCCGATGGTTCCACTTCCAAGGTG 1031788 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || || ||||| ||||||||||| | ||||||| Sbjct 1031789 ATGGTTTTACCGGTCAATGTTTTTACGAAAATTTGCATT 1031827 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| ||||||||||| || |||||||| | | || | |||||||| | || ||||| Sbjct 1032313 AGTTGACTCTTTTTGGATGTTGTAATCCGATAATGTACGACCATCTTCTAATTGTTTACC 1032372 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || ||||| | ||||| |||||||| ||||| || ||||| || ||||||||| ||| Sbjct 1032373 GGCAAAGATCAAACGTTGCTGGTCTGGTGGAATTCCCTCTTTATCCTGAATTTTTGCCTT 1032432 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || || || || || || || ||| || || | || | || || || ||||| || Sbjct 1032433 CACATTTTCGATTGTATCAGATGGTTCAACGTCTAATGTGATGGTTTTACCAGTCAATGT 1032492 Query 195123 TTTTACGAACACTTGCAT 195140 ||| ||||| | |||||| Sbjct 1032493 TTTCACGAAAATTTGCAT 1032510 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| |||||||||||||||||||||| | || | |||||||| | || ||||| Sbjct 1031858 GTGGATTCTTTTTGAATATTGTAATCGGATAAGGTACGGCCATCTTCCAATTGTTTACCA 1031917 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | ||||| || ||||| ||||| ||||| || |||||||| || || Sbjct 1031918 GCGAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTGGCTTTT 1031977 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || || || ||||| || ||||| | || | ||| || || || | || Sbjct 1031978 ACATTTTCGATTGTATCCGATGGCTCGACTTCCAAAGTGATCGTTTTACCAGTTAGGGTC 1032037 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 1032038 TTGACGAAAATTTGCAT 1032054 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || || ||||| || || ||||||||||| |||||||| | || || | |||||| Sbjct 1032755 AATACGAGATGAAGTGTAGATTCTTTTTGAATGTTGTAATCCGATAGGGTGCGACCATCT 1032814 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || | ||| |||||||| || || | ||||| || ||||| || |||||| Sbjct 1032815 TCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGATCTGGTGGGATGCCT 1032865 >seq391 Length=841353 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||| ||||| ||||| || || ||||| |||| | ||| | || || || ||| Sbjct 730850 TGAATTGTGGATTCTTTCTGGATGTTGTAGTCGGATAAAGTGCGGTTGTCGTCTAGTTGC 730909 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || ||||||| ||| || || || ||||| |||||||||||||| ||||| Sbjct 730910 TTACCAGCAAAAATAAGTCTTTGCTGATCCGGGGGAATTCCTTCTTTGTCTTGGATTTTG 730969 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||| | |||||| ||||| |||||| || ||||||| |||| ||||| Sbjct 730970 GTTTTGATGGACTCAATAGTGTCATTTGGTTCCACCTCCAGGGTAATGTTCTTCCCTGTT 731029 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| | ||||| Sbjct 731030 AATGTTTTCACGAAAATCTGCAT 731052 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| ||||| || |||||||| || | | |||||| |||||| | ||| || || Sbjct 251192 GTGGATTCTTTCTGGATATTGTAGTCTGACAAAGTTCTAGAATCTTCTAACTGTTTTCCA 251251 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | ||| ||||||||||| ||||| ||||||||||| |||||||| ||| Sbjct 251252 GCAAAAATTAATCGCTGTTGGTCTGGCGGAATCCCTTCTTTGTCCTGAATTTTCATCTTT 251311 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || ||||||| ||||| ||| ||||| | | | | |||||||| || || Sbjct 251312 ACACTCTCAATAGTGTCGTTGGGTTCGACTTCCAAAGATATATTTTTTCCTGTTAAGGTC 251371 Query 195124 TTTACGAACACTTGCAT 195140 ||||| || | ||| || Sbjct 251372 TTTACAAAAATTTGTAT 251388 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || || || | ||| || || |||||||| |||||||| | | || | | ||| Sbjct 250948 CAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGACAATGTCCGCGAATC 251007 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || || ||||| || || || || | || ||||| || || ||||| |||||||| || Sbjct 251008 GTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGGAATCCCTTCTTTATC 251067 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||||| || ||| | |||||||| || || ||||| || | || | Sbjct 251068 CTGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTACTTCGAGAGAAATATT 251127 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||||||||||||||| || | |||||| Sbjct 251128 TTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 >seq558 Length=611125 Score = 114 bits (126), Expect = 3e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || | ||||| |||||||||||| ||||| ||||| || || || || | Sbjct 303931 AGTCGCAGTACCAAGTGAATAGTGGACTCTTTCTGAATGTTGTAGTCCGCGAGCGTGCGT 303872 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || ||||||||||| || || ||||| | || || ||||| || |||||||| ||| Sbjct 303871 CCGTCGTCGAGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCGGAATGCCCTCT 303812 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||||| || || || |||||| |||| || ||||| Sbjct 303811 TTGTCCTGGATCTTAGCTTTGACGCTCTCGATCGTGTC 303774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109462807461974