Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq768 107 1e-18 seq1 104 2e-17 seq391 98.7 8e-16 >seq768 Length=1243675 Score = 107 bits (118), Expect = 1e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 48535 CGTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAAT 48594 || ||||||| | ||||||| |||||| || | ||| ||| ||||| || ||||| | Sbjct 1130691 CGCCGCCGCCACGCAGCCGCAGCACCAAGTGGATCGTCGACTCCTTTTGGATGTTGTAGT 1130750 Query 48595 CAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG 48654 | | || | || |||| ||||||||||| |||||||| ||||| ||||| || |||| Sbjct 1130751 CCGCGAGCGTGCGCCCGTCATCCAACTGCTTCCCGGCAAAAATCAGACGCTGCTGGTCCG 1130810 Query 48655 TGGGAACGCCCTCCTTGTC 48673 |||| |||||||||||| Sbjct 1130811 GCGGAATGCCCTCCTTGTC 1130829 >seq1 Length=3593316 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | ||| ||||| |||||||| | || || ||||||||||| ||||| || Sbjct 1033255 CCGCCACGTAGACGCAATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCGGAC 1033314 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | ||| | || ||||| || ||||| ||||| |||| ||| || ||||| | ||| Sbjct 1033315 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGA 1033374 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || || || ||| || ||| ||| | | | || || | || || Sbjct 1033375 ATGCCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCGATGGTGTCCGATGGTTCGACT 1033434 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || ||||| |||||||| || || ||||| Sbjct 1033435 TCCAAAGTGATGGTTTTACCAGTCAATGTTTTTACGAAGATTTGCAT 1033481 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||||| ||| |||||||||||||||||||| |||| | || Sbjct 1031837 AGACGAAGCACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAATCGGATAAGGTACGG 1031896 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || ||||| || || |||| || || ||||| | |||| || ||| Sbjct 1031897 CCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCC 1031956 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| ||||||| | | | || || | ||| || |||| || Sbjct 1031957 TTATCTTGAATCTTGGCTTTTACATTTTCGATTGTATCCGATGGCTCGACTTCCAAAGTG 1032016 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| || || | || || || ||||| ||||| Sbjct 1032017 ATCGTTTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 1032054 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| |||||||||| ||| |||||||| ||||| ||||| || | |||| | Sbjct 1033039 CGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGACAATGTTCGGCCA 1033098 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | || ||||| ||||| |||| ||| || ||||| | |||| || || || Sbjct 1033099 TCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGAATACCTTCTTTA 1033158 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || || || ||| ||| | | || || || | || || |||| ||||| Sbjct 1033159 TCCTGGATTTTAGCTTTCACATTTTCGATAGTGTCCGATGGTTCGACTTCCAAAGTAATG 1033218 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || |||||||||||||| ||||| ||||| Sbjct 1033219 GTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| ||||| |||||||| | || ||||||||| || |||||||| ||| Sbjct 1032284 CCACCACGTAGACGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCGAT 1032343 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | || || || || ||||||||||| |||| || || || || | ||| Sbjct 1032344 AATGTACGACCATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTGGA 1032403 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| || || ||| ||| || ||| | | | || || | || || Sbjct 1032404 ATTCCCTCTTTATCCTGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCAACG 1032463 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || ||||| ||||| || ||||| ||||| Sbjct 1032464 TCTAATGTGATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510 >seq391 Length=841353 Score = 98.7 bits (108), Expect = 8e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||| ||||| | ||| ||||| || || ||||| || ||| Sbjct 730826 CCTCCTCTAAGACGAAGCACTAAATGAATTGTGGATTCTTTCTGGATGTTGTAGTCGGAT 730885 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | |||||| | |||||||| ||||| || |||| || ||||||| |||| Sbjct 730886 AAAGTGCGGTTGTCGTCTAGTTGCTTACCAGCAAAAATAAGTCTTTGCTGATCCGGGGGA 730945 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCAC-AGACTCTGACGCCTCCAC 48718 | || || ||||| || ||| ||||| | || || || || | ||||| Sbjct 730946 ATTCCTTCTTTGTCTTGGAT-TTTGGTTTTGATGGACTCAATAGTGTCATTTGGTTCCAC 731004 Query 48719 CTCCACCGTAATCGTTTTTCCC-GTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| ||||| ||| ||||| || || ||||| || |||||||||||| Sbjct 731005 CTCCAGGGTAAT-GTTCTTCCCTGTTAATGTTTTCACGAAAATCTGCATC 731053 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || ||||| | ||| || |||| ||| ||||| || |||||||| || || Sbjct 251390 CCTCCTCTAAGCCGTAGCACTAAGTGTAACGTCGATTCTTTCTGGATATTGTAGTCTGAC 251449 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | || || || || || || ||||| || | ||| |||||||| | ||| Sbjct 251450 AAAGTTCTAGAATCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGTTGATCAGGCGGA 251509 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCAC 48718 | || ||||| || ||| ||| ||||| ||| | | | || | | || || Sbjct 251510 ATTCCTTCCTTATCCTGAAT-TTTCGTTTTCACATTTTCAATTGTGTCAGTGGGTTCTAC 251568 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || ||| |||| || || || ||||||||||| |||||||| Sbjct 251569 CTCAAGCGAAATATTTTTACCTGTTAATGTTTTTACAAATATCTGCAT 251616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380931462381006