Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq768 107 1e-18
seq1 104 2e-17
seq391 98.7 8e-16
>seq768
Length=1243675
Score = 107 bits (118), Expect = 1e-18
Identities = 107/139 (77%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 48535 CGTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAAT 48594
|| ||||||| | ||||||| |||||| || | ||| ||| ||||| || ||||| |
Sbjct 1130691 CGCCGCCGCCACGCAGCCGCAGCACCAAGTGGATCGTCGACTCCTTTTGGATGTTGTAGT 1130750
Query 48595 CAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG 48654
| | || | || |||| ||||||||||| |||||||| ||||| ||||| || ||||
Sbjct 1130751 CCGCGAGCGTGCGCCCGTCATCCAACTGCTTCCCGGCAAAAATCAGACGCTGCTGGTCCG 1130810
Query 48655 TGGGAACGCCCTCCTTGTC 48673
|||| ||||||||||||
Sbjct 1130811 GCGGAATGCCCTCCTTGTC 1130829
>seq1
Length=3593316
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
||||| | ||| ||||| |||||||| | || || ||||||||||| ||||| ||
Sbjct 1033255 CCGCCACGTAGACGCAATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCGGAC 1033314
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
| | | ||| | || ||||| || ||||| ||||| |||| ||| || ||||| | |||
Sbjct 1033315 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGA 1033374
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||| || || || ||| || ||| ||| | | | || || | || ||
Sbjct 1033375 ATGCCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCGATGGTGTCCGATGGTTCGACT 1033434
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| || || ||||| || ||||| |||||||| || || |||||
Sbjct 1033435 TCCAAAGTGATGGTTTTACCAGTCAATGTTTTTACGAAGATTTGCAT 1033481
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||||||||| ||| |||||||||||||||||||| |||| | ||
Sbjct 1031837 AGACGAAGCACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAATCGGATAAGGTACGG 1031896
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||| || ||||| || || |||| || || ||||| | |||| || |||
Sbjct 1031897 CCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCC 1031956
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || |||||| ||||||| | | | || || | ||| || |||| ||
Sbjct 1031957 TTATCTTGAATCTTGGCTTTTACATTTTCGATTGTATCCGATGGCTCGACTTCCAAAGTG 1032016
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||||||| || || | || || || ||||| |||||
Sbjct 1032017 ATCGTTTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 1032054
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611
||||| |||||||||| ||| |||||||| ||||| ||||| || | |||| |
Sbjct 1033039 CGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGACAATGTTCGGCCA 1033098
Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671
|| || | || ||||| ||||| |||| ||| || ||||| | |||| || || ||
Sbjct 1033099 TCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGAATACCTTCTTTA 1033158
Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731
|| || || ||| ||| | | || || || | || || |||| |||||
Sbjct 1033159 TCCTGGATTTTAGCTTTCACATTTTCGATAGTGTCCGATGGTTCGACTTCCAAAGTAATG 1033218
Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || |||||||||||||| ||||| |||||
Sbjct 1033219 GTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || | ||| ||||| |||||||| | || ||||||||| || |||||||| |||
Sbjct 1032284 CCACCACGTAGACGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCGAT 1032343
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
| | ||| | || || || || ||||||||||| |||| || || || || | |||
Sbjct 1032344 AATGTACGACCATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTGGA 1032403
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||||| || || ||| ||| || ||| | | | || || | || ||
Sbjct 1032404 ATTCCCTCTTTATCCTGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCAACG 1032463
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | || || ||||| || ||||| ||||| || ||||| |||||
Sbjct 1032464 TCTAATGTGATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510
>seq391
Length=841353
Score = 98.7 bits (108), Expect = 8e-16
Identities = 163/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || || | ||| ||||| | ||| ||||| || || ||||| || |||
Sbjct 730826 CCTCCTCTAAGACGAAGCACTAAATGAATTGTGGATTCTTTCTGGATGTTGTAGTCGGAT 730885
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
| | | || | |||||| | |||||||| ||||| || |||| || ||||||| ||||
Sbjct 730886 AAAGTGCGGTTGTCGTCTAGTTGCTTACCAGCAAAAATAAGTCTTTGCTGATCCGGGGGA 730945
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCAC-AGACTCTGACGCCTCCAC 48718
| || || ||||| || ||| ||||| | || || || || | |||||
Sbjct 730946 ATTCCTTCTTTGTCTTGGAT-TTTGGTTTTGATGGACTCAATAGTGTCATTTGGTTCCAC 731004
Query 48719 CTCCACCGTAATCGTTTTTCCC-GTCAAAGTTTTTACAAAAATCTGCATC 48767
||||| ||||| ||| ||||| || || ||||| || ||||||||||||
Sbjct 731005 CTCCAGGGTAAT-GTTCTTCCCTGTTAATGTTTTCACGAAAATCTGCATC 731053
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || ||||| | ||| || |||| ||| ||||| || |||||||| || ||
Sbjct 251390 CCTCCTCTAAGCCGTAGCACTAAGTGTAACGTCGATTCTTTCTGGATATTGTAGTCTGAC 251449
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
| | ||| | || || || || || || ||||| || | ||| |||||||| | |||
Sbjct 251450 AAAGTTCTAGAATCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGTTGATCAGGCGGA 251509
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCAC 48718
| || ||||| || ||| ||| ||||| ||| | | | || | | || ||
Sbjct 251510 ATTCCTTCCTTATCCTGAAT-TTTCGTTTTCACATTTTCAATTGTGTCAGTGGGTTCTAC 251568
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| | || ||| |||| || || || ||||||||||| ||||||||
Sbjct 251569 CTCAAGCGAAATATTTTTACCTGTTAATGTTTTTACAAATATCTGCAT 251616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380931462381006
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |