Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq335 282 8e-71 >seq335 Length=939964 Score = 282 bits (312), Expect = 8e-71 Identities = 1003/1542 (65%), Gaps = 53/1542 (3%) Strand=Plus/Minus Query 212954 GTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGT 213013 ||| || ||||| ||||||| |||| |||||| || ||||| | ||| || || Sbjct 180111 GTTCGACGTGTACGGCTCGAACGACTCGCAGTTCCCGAGGATCTGCGAAGTCGACGCCGT 180052 Query 213014 GGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC-CGAA 213072 ||||| || || ||||| || ||||| | || |||| || | | || | | | || | Sbjct 180051 CGGCATCGGCGCGACCAGCAGGCTGTTGCGCAGCCCGTACTTGACCATC-GCCTCGCGCA 179993 Query 213073 GCTCTGCCCAGTCCCATCTGCCAGACAGGTC--------------------CTCGTCCTT 213112 |||| |||||||||| |||| || || | | || | || Sbjct 179992 GCTCCTCCCAGTCCCACATGCCCGAGAGCTGAATCTCACGCAAGTTCCGCTCGCGCCGTT 179933 Query 213113 CA-CGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGG 213171 | ||||||||| ||| ||||| || |||||| |||| |||| ||| | | | | Sbjct 179932 CTTCGTTCCACAAGTCGAACTGGAATTTGCCTTCGCTCGCGGGCGAGCCTTCGAAGCTCG 179873 Query 213172 AGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGG 213231 ||| || || |||||||| || |||||| | ||| || || || ||||||| | Sbjct 179872 CGTACGGCCCGTGCTCCTTCGCGAGCTCGACGCTCGCGGTCACCGCGCCGAAGTAGATCG 179813 Query 213232 TTTCAAATATCTCCCTGTTGAGCTTC-TTGGCCTCTGGGGACGT-GAAGGGCATCATCAT 213289 | || || || | | |||| | |||| || ||||| |||| || ||| |||| | || Sbjct 179812 TCTCGAAGATGTTCTTGTTCA-CTTCGTTCGCCTC-GGGGCTGTCGAACGGCAGCCGCAG 179755 Query 213290 GCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTT 213349 | || | | | || || | || || || ||||||||||| || | ||| | |||||| Sbjct 179754 CAGCTGCAGCGCGTCCGCGAAGCCTTGCACGCCGATGCCGATCGGCCGGTGCCGCAGGTT 179695 Query 213350 AGACTTGGAGCACTCCTCCAAGGG---GTAAAAGTTGCAGTCGATGATCTTGTTGAGGTT 213406 || | | ||| | || ||| ||| |||||| | ||||| ||||| Sbjct 179694 GC---TGCGCCGCGCCTTCTCGGTCACGTAGAAGCCCACGTCGATCACGTTGTTCAGGTT 179638 Query 213407 GCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCC-CGT 213465 | || | | || | ||| | | ||| | ||||| ||||| || || | || Sbjct 179637 CTGCGTCACGATCTTCGCGACCTCGAACAGCTTCTCGTAGTTGAAG-CGCCGCTTCTCGA 179579 Query 213466 CCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAGAG 213524 | | ||| || | ||||| | | || |||||||| || || | ||||| | | | Sbjct 179578 CGTCCACGTACGCGGGCAGCGACAGCGACGCGAGGTTGCACACCGCGATCTCCTCGCGCG 179519 Query 213525 TCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGG 213584 | ||||||| || | || ||||||||||| | | |||||||||| |||||| | Sbjct 179518 AC-GTGTACTGCACCACTTCCGTGCACAGGTTCGAGGACTGGATGGTGCCGAGGTTCCGC 179460 Query 213585 TGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAG 213643 ||||| ||||| ||| | ||| | |||||||| | || ||| || || ||||| | Sbjct 179459 TGGTTCGACTT-GCGGTTGCACGCGTCCTTGTACACCAAGTACGGATTGCCCGTCTCGAT 179401 Query 213644 CTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCC 213703 ||| | || || ||||||| | ||||| ||| |||| || ||| | Sbjct 179400 CTGCGTGTTCACAATGACCGTCCAGAGCGCGCGCGCCTTCACCTGCCGCACGA-AGCGCT 179342 Query 213704 GGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAG 213763 | || |||||||| | ||| ||| ||| ||| || ||||||||| | || Sbjct 179341 GCTCG--GCCTCGTAGCGCGTGTACAGCGCGTCGAACTCCGCGCCCCAGACTTCGAACAA 179284 Query 213764 TCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCAT 213823 ||||| | ||||||||||| || ||||| | ||||| || || | |||| Sbjct 179283 GCCCGGCGACTGCGCGGGACACATCAGACTCCACACGCCGTCTTCGTCCACGCGGCGCAT 179224 Query 213824 GAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCC 213883 ||||| ||| || ||||| | ||| ||||||| || | | ||| || || Sbjct 179223 GAACAAGTCGTTGATGTACAGCCCCAGGAAGAGGTCCCGCGTGCGCAACTCTTCGTTGCC 179164 Query 213884 AGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGAT 213943 ||| ||||| || | || || |||||||| |||||||||||||||| |||||| Sbjct 179163 GTGGTTGCGCCGCAGCTCGATGAACTCGAAGATGTCTGCGTGCCACGGCTCCAGGTAGAT 179104 Query 213944 GGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAA 214000 || ||| |||| | ||| |||||||||||| || | || | |||||| Sbjct 179103 CGCGAAGCCGCCTTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCGGTCGCGTTGAA 179044 Query 214001 GATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCC 214060 | |||||| | || || | ||||||| | ||||| || ||||| || |||| | Sbjct 179043 CACGCGCAGCATCGGCACGATCCCGTTGCTGCGCCCGTTCGTGCCCGCGATGTACGCGTT 178984 Query 214061 GGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGC 214120 | || | | ||| || | |||||| || || || ||||||||| ||||| || Sbjct 178983 CGTCGCGCGGATCTTGTGGATCGCGAGCCCGATCCCGCCAGCGTACTTGCTGATCACCGC 178924 Query 214121 GCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAA 214180 ||| | ||| || || | ||||| | || ||| || | | | ||||| || Sbjct 178923 GCACTCCTTCAGCGTGTCGAAAATGCCCTCGATCGAGTCGTCGGCCATCTGCAGCAGAAA 178864 Query 214181 GCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGAT 214240 |||||| |||||||| ||| | || | |||||| ||||| || | || ||||| Sbjct 178863 GCAGCTGGAGAGCTGTTGCCGCTTCAGCCCGGCGTTGAACAGCGTCGGCGTCGCGTGGAT 178804 Query 214241 CATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTG 214300 | ||||||| | || | |||| ||| ||||||| | || | |||| | ||| Sbjct 178803 GAAAAACTTGCTCGACATCAGCCGGTACGTCTCCAAAATCCGCGGCAAGTCGCCCAAGTG 178744 Query 214301 GATCTGTAGAGCG-CAC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGG 214358 |||| || || ||| | ||| | ||||| ||| |||| ||| | | || ||| | Sbjct 178743 GATC--GCGACCGACACGCGCATGAACATGTACTGCGGCCGCTCGA-CGATCTTTTTGTT 178687 Query 214359 C-CCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAGTAGGTATGATC 214417 | |||| |||||||| |||||||| || |||||||| || |||||| | | || Sbjct 178686 CGCCTTCAGCAGGTACGAGCGCTCGAGCGTCTTGAAGCCGAAGTAGTCGAACTCGAAGTC 178627 Query 214418 GTTC-CCGTGTATGAGGGCAGCGTCCAGCTCTTCCGCGTGCT 214458 |||| ||| | | || || ||||||||||| | ||||||| Sbjct 178626 GTTCGCCGAG-ACGATCGCCGCGTCCAGCTCCGCGGCGTGCT 178586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931517406420480