Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq569 206 1e-48
seq1101 159 2e-34
seq1 140 2e-28
>seq569
Length=351751
Score = 206 bits (228), Expect = 1e-48
Identities = 282/394 (72%), Gaps = 0/394 (0%)
Strand=Plus/Minus
Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992
|||||||||||| || ||||| | |||||| |||| ||| | || | | ||||||
Sbjct 123686 CATAAATAAATCCGGTATCCATAATGCATAGAATAGATCACGTGCACGTAATTCTTCCGA 123627
Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052
|| ||||||||| | |||||| || |||| |||||||| ||||||||||||| |||
Sbjct 123626 ACCAGTATTCTTTTTCAAATCTAAAAATGCAAATATATCTGAATGCCATGGTTCTAGATA 123567
Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112
||||||||| |||| | |||||| ||||||||||| || || | ||| || | |||
Sbjct 123566 GATAGCAAATGCACCTGGACGTTTTCCACCACCTTGATCAACATAACGTGCTGTATTATT 123507
Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172
|| || ||||||||||| | |||| ||||||| || || || | | ||| | ||
Sbjct 123506 AAATACACGTAACATTGGAACGAGTCCATTTGAAAAACCATTAGTACCAGCAATATATGA 123447
Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232
|||| || | |||| || ||| | ||| || |||||||| ||||||||| |
Sbjct 123446 TCCTTGTGAACGAATACAATGTACATTTAAACCAATACCACCAGCAGATTTTGAAACAAT 123387
Query 26233 TGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAA 26292
||||||| | | |||||| | ||||||| || |||||| | |||| ||| |
Sbjct 123386 TGCACAACGTTTTAATGTATCATATATTCCTTCAATACTATCATCGGACATTGTTAACAG 123327
Query 26293 AAAACAAGAAGATAATTGCGAATGAGTTGTTCCT 26326
||||| || || | ||| | ||| | ||| |||
Sbjct 123326 GAAACAGGATGACATTTGTGGATGTGGTGTACCT 123293
Score = 105 bits (116), Expect = 3e-18
Identities = 350/530 (66%), Gaps = 32/530 (6%)
Strand=Plus/Minus
Query 24665 GTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAAT 24724
|||||||| | ||| | |||| ||||| |||| ||||||||||||||| ||||| |||
Sbjct 124924 GTAAATTGTATGGCTTGTGCTGCCGGTTTTGTTCGAAGATAATACATTCCTGTTTTTAAT 124865
Query 24725 TTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAA 24784
|| |||||| ||||||||||||||||| | |||||| || | || ||| |
Sbjct 124864 CCATTACGCCAACCATAAAAATGCATTGATGTAATTTTTGC---TTTAGATGGTTC-AGC 124809
Query 24785 AACAAGTTCAT----CGATTGAGCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTC 24840
| | || ||| |||||| ||| | ||| | ||| ||| | ||
Sbjct 124808 CATATGTACATTTAATGATTGACTTTGATCGATAAATGCACCACGATCAATAGCCATATC 124749
Query 24841 AATGAT-CGTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTG 24899
|| || | |||| | | ||| || | ||||||| ||| ||| || ||| |
Sbjct 124748 GATAATACATTTTTGT-GGTATTTCCCATACTGTTTTATATAATGATTTGATATCATCCG 124690
Query 24900 GAATACTTGCAATATTTTGAACTGATCC---ATTTTCTCTCAATAGA----TTCAATCTC 24952
| || |||||| || | ||| || ||| | | |||||| |||||| ||
Sbjct 124689 GTATTGAATCAATATCCTGTATTGAACCACGATTAGCAAT-AATAGAATTTTTCAAT-TC 124632
Query 24953 AT-ATT-CGGTGTCCAAAGATTAATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGA 25010
|| ||| | |||| || ||||||| | |||| ||| || |||| ||| | |
Sbjct 124631 ATCATTCCAAAGTCCCAA-ATTAATT------AAATCTTTAAGTAAATGTTGATTAACAA 124579
Query 25011 TAATAAATTCTCCAGACAAAACTCTTCT--TATTGATAAGTTTGAAGTGAATGGTTCAAA 25068
|| ||| || |||| ||| | ||| ||| |||| ||||| || ||||||||||
Sbjct 124578 TATCAAAACTACCGGACATAACACGTCTAGTATAGATA--TTTGATGTATATGGTTCAAA 124521
Query 25069 ACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAG 25128
|||||||||| || | ||||| | || ||||||||||||||| ||| | ||||
Sbjct 124520 TGATTCATTATTACCAAGAATTTGTGCGGTTGATGCTGTTGGCATTGGTGCAACCAATAA 124461
Query 25129 CGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAAT 25178
||||| | ||||||||| ||| | || ||| |||| | |||||
Sbjct 124460 ACTATTTCGAATACCATATTTGGAAATTTTTTCTTTCAATTCAGACCAAT 124411
>seq1101
Length=1082900
Score = 159 bits (176), Expect = 2e-34
Identities = 187/250 (75%), Gaps = 2/250 (1%)
Strand=Plus/Minus
Query 25918 TTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGC 25977
||| || ||| | | |||||| ||||| |||||||||| ||| || || ||||| | ||
Sbjct 175463 TTGGTCTACTCTTTTCATAAACAAATCAGGAATCCACAATGCGTAGAACAAATCCCGAGC 175404
Query 25978 TCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTG 26037
| |||||| | ||||||||| |||||||| |||||||| || |||||||| | ||
Sbjct 175403 ACGAGCTTCTTCATGTCCGTGATTTTTTTTTAGTTCTAAGAATTCGAAAATATCCAAATG 175344
Query 26038 CCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTA 26097
|||||| || | ||| | ||||| | || |||| | |||| |||||||| || || ||
Sbjct 175343 CCATGGCTCCAGATATACTGCAAAGCCGCCCTTTCGTCTTCCACCACCTTGGTCGACATA 175284
Query 26098 TCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAAT-CCGTTTG 26156
| || ||||||||||||||||| | ||| || | ||| | |||| ||| || ||||
Sbjct 175283 ACGGGCGGTTTCATTGAAAACTTTGAGCATAGGTA-TAACACCGTTGCTAATACCATTTG 175225
Query 26157 TGCTATGAAT 26166
| | |||||
Sbjct 175224 TACCTTGAAT 175215
>seq1
Length=3593316
Score = 140 bits (154), Expect = 2e-28
Identities = 398/607 (66%), Gaps = 11/607 (2%)
Strand=Plus/Minus
Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992
||| |||||||| |||||||| | |||||||||||||| | || | | ||| ||
Sbjct 3536965 CATGAATAAATCAGGAATCCATAGAGCATAAAATAAATCACGTGCACGTAGTTCCTCCGA 3536906
Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052
||| ||| || ||| || |||||||| ||||| || ||||||||||| | |||
Sbjct 3536905 ACCGGTATTTTTGCGAAGACTTAGAAAATCAAAGATATCAGAATGCCATGGTTCCAGATA 3536846
Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112
||| ||||| || | ||| ||||||||||| || |||| ||||| | |||
Sbjct 3536845 GATGGCAAATGCTCCAGGACGTTTGTTACCACCTTGATCAACATATCGAGCAGTATTATT 3536786
Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172
| | || | ||| |||| || ||| | || | ||| ||||| | ||| |
Sbjct 3536785 GTATACGCGTAGCATAGGAATCAAGCCATTAGAGATTCCATTTGTACCGGCAATATAACT 3536726
Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232
|| | |||| ||| ||| || || ||| || |||||||| ||||||| ||
Sbjct 3536725 ACCAGAAGATCGGATACAATGAATATTAAGACCAATGCCACCAGCTGATTTTGAGATGAT 3536666
Query 26233 TGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAA 26292
||||| | | || ||||| | || |||| ||||||||| | |||| | |
Sbjct 3536665 GGCACATTGTTTAAGCGTATCATATATACCTTCAATGCTATCATCACTCATAGTGAGCAG 3536606
Query 26293 AAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATG 26352
|||||| || |||||||||| | ||||||| | ||| || || || |||| |||||
Sbjct 3536605 AAAACATGATGATAATTGCGGCCGTTTTGTTCCGGCATTGAACAACGTAGGTGATGCATG 3536546
Query 26353 AGTA---TAATATCCTTCACTCAAAGCTGTATAAGTTTCAAGAACTTCATCGATATTGTA 26409
||| ||| | | ||||| |||| ||||||| | |||| |||| |
Sbjct 3536545 TGTAAACCAATTTTCCGATATCAAA---TTATATGTTTCAATGGCAGCATCAATATCATC 3536489
Query 26410 ATTACTAACTTCAATAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATT 26469
| | || ||||||| | | | |||||| ||||||| ||| |||| ||
Sbjct 3536488 ACGATGAATACCAATAGCACAACGCATCAACATATGCTGAGGTCTTTC---TACA-ACTT 3536433
Query 26470 TTCCG-CATCTCTAATCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGAT 26528
| ||| || | | | ||||||| | | ||| ||||| || || ||||||| | ||
Sbjct 3536432 TACCGCCAATTTTGAGCAAATAACTTCGATATAATGTTTTGAAACCGAAATAATTGTAAT 3536373
Query 26529 TGAAATC 26535
| |||||
Sbjct 3536372 TAAAATC 3536366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253035923051150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |