Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq569 206 1e-48 seq1101 159 2e-34 seq1 140 2e-28 >seq569 Length=351751 Score = 206 bits (228), Expect = 1e-48 Identities = 282/394 (72%), Gaps = 0/394 (0%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||||||||| || ||||| | |||||| |||| ||| | || | | |||||| Sbjct 123686 CATAAATAAATCCGGTATCCATAATGCATAGAATAGATCACGTGCACGTAATTCTTCCGA 123627 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || ||||||||| | |||||| || |||| |||||||| ||||||||||||| ||| Sbjct 123626 ACCAGTATTCTTTTTCAAATCTAAAAATGCAAATATATCTGAATGCCATGGTTCTAGATA 123567 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 ||||||||| |||| | |||||| ||||||||||| || || | ||| || | ||| Sbjct 123566 GATAGCAAATGCACCTGGACGTTTTCCACCACCTTGATCAACATAACGTGCTGTATTATT 123507 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 || || ||||||||||| | |||| ||||||| || || || | | ||| | || Sbjct 123506 AAATACACGTAACATTGGAACGAGTCCATTTGAAAAACCATTAGTACCAGCAATATATGA 123447 Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232 |||| || | |||| || ||| | ||| || |||||||| ||||||||| | Sbjct 123446 TCCTTGTGAACGAATACAATGTACATTTAAACCAATACCACCAGCAGATTTTGAAACAAT 123387 Query 26233 TGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAA 26292 ||||||| | | |||||| | ||||||| || |||||| | |||| ||| | Sbjct 123386 TGCACAACGTTTTAATGTATCATATATTCCTTCAATACTATCATCGGACATTGTTAACAG 123327 Query 26293 AAAACAAGAAGATAATTGCGAATGAGTTGTTCCT 26326 ||||| || || | ||| | ||| | ||| ||| Sbjct 123326 GAAACAGGATGACATTTGTGGATGTGGTGTACCT 123293 Score = 105 bits (116), Expect = 3e-18 Identities = 350/530 (66%), Gaps = 32/530 (6%) Strand=Plus/Minus Query 24665 GTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAAT 24724 |||||||| | ||| | |||| ||||| |||| ||||||||||||||| ||||| ||| Sbjct 124924 GTAAATTGTATGGCTTGTGCTGCCGGTTTTGTTCGAAGATAATACATTCCTGTTTTTAAT 124865 Query 24725 TTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAA 24784 || |||||| ||||||||||||||||| | |||||| || | || ||| | Sbjct 124864 CCATTACGCCAACCATAAAAATGCATTGATGTAATTTTTGC---TTTAGATGGTTC-AGC 124809 Query 24785 AACAAGTTCAT----CGATTGAGCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTC 24840 | | || ||| |||||| ||| | ||| | ||| ||| | || Sbjct 124808 CATATGTACATTTAATGATTGACTTTGATCGATAAATGCACCACGATCAATAGCCATATC 124749 Query 24841 AATGAT-CGTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTG 24899 || || | |||| | | ||| || | ||||||| ||| ||| || ||| | Sbjct 124748 GATAATACATTTTTGT-GGTATTTCCCATACTGTTTTATATAATGATTTGATATCATCCG 124690 Query 24900 GAATACTTGCAATATTTTGAACTGATCC---ATTTTCTCTCAATAGA----TTCAATCTC 24952 | || |||||| || | ||| || ||| | | |||||| |||||| || Sbjct 124689 GTATTGAATCAATATCCTGTATTGAACCACGATTAGCAAT-AATAGAATTTTTCAAT-TC 124632 Query 24953 AT-ATT-CGGTGTCCAAAGATTAATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGA 25010 || ||| | |||| || ||||||| | |||| ||| || |||| ||| | | Sbjct 124631 ATCATTCCAAAGTCCCAA-ATTAATT------AAATCTTTAAGTAAATGTTGATTAACAA 124579 Query 25011 TAATAAATTCTCCAGACAAAACTCTTCT--TATTGATAAGTTTGAAGTGAATGGTTCAAA 25068 || ||| || |||| ||| | ||| ||| |||| ||||| || |||||||||| Sbjct 124578 TATCAAAACTACCGGACATAACACGTCTAGTATAGATA--TTTGATGTATATGGTTCAAA 124521 Query 25069 ACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAG 25128 |||||||||| || | ||||| | || ||||||||||||||| ||| | |||| Sbjct 124520 TGATTCATTATTACCAAGAATTTGTGCGGTTGATGCTGTTGGCATTGGTGCAACCAATAA 124461 Query 25129 CGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAAT 25178 ||||| | ||||||||| ||| | || ||| |||| | ||||| Sbjct 124460 ACTATTTCGAATACCATATTTGGAAATTTTTTCTTTCAATTCAGACCAAT 124411 >seq1101 Length=1082900 Score = 159 bits (176), Expect = 2e-34 Identities = 187/250 (75%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 25918 TTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGC 25977 ||| || ||| | | |||||| ||||| |||||||||| ||| || || ||||| | || Sbjct 175463 TTGGTCTACTCTTTTCATAAACAAATCAGGAATCCACAATGCGTAGAACAAATCCCGAGC 175404 Query 25978 TCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTG 26037 | |||||| | ||||||||| |||||||| |||||||| || |||||||| | || Sbjct 175403 ACGAGCTTCTTCATGTCCGTGATTTTTTTTTAGTTCTAAGAATTCGAAAATATCCAAATG 175344 Query 26038 CCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTA 26097 |||||| || | ||| | ||||| | || |||| | |||| |||||||| || || || Sbjct 175343 CCATGGCTCCAGATATACTGCAAAGCCGCCCTTTCGTCTTCCACCACCTTGGTCGACATA 175284 Query 26098 TCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAAT-CCGTTTG 26156 | || ||||||||||||||||| | ||| || | ||| | |||| ||| || |||| Sbjct 175283 ACGGGCGGTTTCATTGAAAACTTTGAGCATAGGTA-TAACACCGTTGCTAATACCATTTG 175225 Query 26157 TGCTATGAAT 26166 | | ||||| Sbjct 175224 TACCTTGAAT 175215 >seq1 Length=3593316 Score = 140 bits (154), Expect = 2e-28 Identities = 398/607 (66%), Gaps = 11/607 (2%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| |||||||| |||||||| | |||||||||||||| | || | | ||| || Sbjct 3536965 CATGAATAAATCAGGAATCCATAGAGCATAAAATAAATCACGTGCACGTAGTTCCTCCGA 3536906 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 ||| ||| || ||| || |||||||| ||||| || ||||||||||| | ||| Sbjct 3536905 ACCGGTATTTTTGCGAAGACTTAGAAAATCAAAGATATCAGAATGCCATGGTTCCAGATA 3536846 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 ||| ||||| || | ||| ||||||||||| || |||| ||||| | ||| Sbjct 3536845 GATGGCAAATGCTCCAGGACGTTTGTTACCACCTTGATCAACATATCGAGCAGTATTATT 3536786 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 | | || | ||| |||| || ||| | || | ||| ||||| | ||| | Sbjct 3536785 GTATACGCGTAGCATAGGAATCAAGCCATTAGAGATTCCATTTGTACCGGCAATATAACT 3536726 Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232 || | |||| ||| ||| || || ||| || |||||||| ||||||| || Sbjct 3536725 ACCAGAAGATCGGATACAATGAATATTAAGACCAATGCCACCAGCTGATTTTGAGATGAT 3536666 Query 26233 TGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAA 26292 ||||| | | || ||||| | || |||| ||||||||| | |||| | | Sbjct 3536665 GGCACATTGTTTAAGCGTATCATATATACCTTCAATGCTATCATCACTCATAGTGAGCAG 3536606 Query 26293 AAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATG 26352 |||||| || |||||||||| | ||||||| | ||| || || || |||| ||||| Sbjct 3536605 AAAACATGATGATAATTGCGGCCGTTTTGTTCCGGCATTGAACAACGTAGGTGATGCATG 3536546 Query 26353 AGTA---TAATATCCTTCACTCAAAGCTGTATAAGTTTCAAGAACTTCATCGATATTGTA 26409 ||| ||| | | ||||| |||| ||||||| | |||| |||| | Sbjct 3536545 TGTAAACCAATTTTCCGATATCAAA---TTATATGTTTCAATGGCAGCATCAATATCATC 3536489 Query 26410 ATTACTAACTTCAATAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATT 26469 | | || ||||||| | | | |||||| ||||||| ||| |||| || Sbjct 3536488 ACGATGAATACCAATAGCACAACGCATCAACATATGCTGAGGTCTTTC---TACA-ACTT 3536433 Query 26470 TTCCG-CATCTCTAATCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGAT 26528 | ||| || | | | ||||||| | | ||| ||||| || || ||||||| | || Sbjct 3536432 TACCGCCAATTTTGAGCAAATAACTTCGATATAATGTTTTGAAACCGAAATAATTGTAAT 3536373 Query 26529 TGAAATC 26535 | ||||| Sbjct 3536372 TAAAATC 3536366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253035923051150