Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq569 188 9e-43 seq1 170 2e-37 seq1101 89.7 6e-13 seq768 84.2 3e-11 >seq569 Length=351751 Score = 188 bits (208), Expect = 9e-43 Identities = 467/699 (67%), Gaps = 16/699 (2%) Strand=Plus/Plus Query 75897 CACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTA 75956 |||| | || || || || ||||||||| | ||||| ||| |||||| || | Sbjct 123856 CACAAATTGAAACCGGTACTCCATATATGTTATACAAAGATCATTGTAATCGTAAATCAA 123915 Query 75957 ACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACA 76016 | ||| | ||| | || ||||| || | ||||||||||| || |||||| | || || Sbjct 123916 ATCAACAAAATCTTGGTACAATTAAATGTTCAAATCTTTGTACAGAAATTGTTGAATATT 123975 Query 76017 CAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCA 76076 || ||||| ||| || || ||||| ||||| || | | ||| | ||| Sbjct 123976 CATCACCAGATGAAGTGGCCGTATGTAATTTAGCATCGATTTCATTACCACGTTTTGTTG 124035 Query 76077 ATGAAGAGACTCGCAC-TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACC 76135 || || | ||||| | |||||||||||||||||| | |||| || | | || Sbjct 124036 ATCAA-AAACTCGGTCAATTTGATTATGAAAAACTTAAAAAAATTGTTAAAGTAATGACA 124094 Query 76136 AAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAG 76192 |||||| ||||| | | ||||| | |||| |||||| | |||| | || Sbjct 124095 AAAAATTTAAACAAAATTATTGATGGTAATTATTATCCATTACCGGAGA---CAAGACTT 124151 Query 76193 TCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT 76252 || ||| | || || |||||||||| | ||||| |||||| | || |||| ||| | | Sbjct 124152 TCAAATTTACGTCATCGACCTATTGGACTTGGTGTACAAGGTTTAGCCGATGCATTCAGT 124211 Query 76253 TTGTGCCGCTACGCATTTGATTCAGAT--GAAGCCAAGGAGATGAATGCTCGTATCTTTG 76310 | | || || ||| ||| || | ||||| || | |||||| | || |||| Sbjct 124212 CTATTACGTTATCCATATGA--AAGTTTGGAAGCAAAAAAAATGAATATCCAAATATTTG 124269 Query 76311 AAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCT 76370 |||| || ||| | | | |||| || ||||||||||| || ||| | ||| | | Sbjct 124270 AAACAATTTATTATGGTGCATTGGAAGCAAGTTGTGAATTAGCAGAACAATATGGTCCAT 124329 Query 76371 ATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAG 76430 |||| || | | | || || || | || |||| | || || | |||||||||| | Sbjct 124330 ATGAAACTTATCAAGGATCACCAGTATCAAAAGGTATTCTACAATATGATATGTGGAATC 124389 Query 76431 GTGAAACCAAGCTCAACTACG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGG 76488 || | ||||| | | || | | ||| || | || ||| || | | || Sbjct 124390 GT-ACACCAA-CCGATCTTTGGAATTGGTCTGAATTGAAAGAAAAAATTTCCAAATATGG 124447 Query 76489 TCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGG 76548 | |||| || ||| | ||| | ||||||||||||||||| || ||||||||||| | || Sbjct 124448 TATTCGAAATAGTTTATTGGTTGCACCAATGCCAACAGCATCAACCGCACAAATTCTTGG 124507 Query 76549 TAATAATGAATGCTTTGAACCATACACAACAAACATCTA 76587 ||||||||||| ||||||||||| ||| |||| ||||| Sbjct 124508 TAATAATGAATCATTTGAACCATATACATCAAATATCTA 124546 >seq1 Length=3593316 Score = 170 bits (188), Expect = 2e-37 Identities = 475/721 (66%), Gaps = 16/721 (2%) Strand=Plus/Plus Query 75876 TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGG 75935 ||||| |||||||| ||||||| | || |||||||||||||| ||| ||||||| | Sbjct 3537114 TTTGGTTTGCTATTCTTGAATCACAAATCGAAACTGGAACACCATACATGGTTTACAAAG 3537173 Query 75936 ATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTT 75995 || |||||| || || ||| | ||| | || |||||||| | || ||||||| Sbjct 3537174 ATCATTGTAATCGAAAATCAAATCAACAAAATCTCGGTACAATCAAATGTTCGAATCTTT 3537233 Query 75996 GCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAA 76055 | || |||||| | || || || ||| ||||| || || || ||| | || |||| Sbjct 3537234 GTACCGAAATTGTGGAATATTCATCTAAAGATGAAGTAGCCGTCTGTAATCTAGCTTCAA 3537293 Query 76056 TCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATG 76115 |||| | || | ||| || | | | || | ||||||| ||||||| || Sbjct 3537294 TCGCATTGAATAAATTTGTTGATCCAAAAAAACGAATCTTTGATTTTGAAAAA----TTG 3537349 Query 76116 AAATCACA-----AAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTA 76170 ||||| || ||| |||| || ||||| || ||| || ||| | || || Sbjct 3537350 AAATC-CATTGTCAAGGTTGTAACTCGTAATCTGGACAAAGTTATCGACGTGACTTACTA 3537408 Query 76171 TCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTC 76229 ||| || ||| || | | || ||| | || || |||| || || | ||||||| Sbjct 3537409 TCCTGTACCAGA-AGCTCAACGTTCGAATCTTCGTCATCGACCAATGGGAATCGGTGTTC 3537467 Query 76230 AAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGG 76289 |||| | || |||| ||||||||| || || |||| ||| || ||||| Sbjct 3537468 AAGGATTAGCAGATGCGTTTATTTTGATGCGTTATCCATTCGATAGTGAAGAAGCTCGAT 3537527 Query 76290 AGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAAT 76349 | | ||| || || |||||||| || ||| | | ||| | || |||||||||||| Sbjct 3537528 TGCTCAATATTCAGATTTTTGAAACAATTTATTATGGATCATTAGAAACGAGTTGTGAAT 3537587 Query 76350 TGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGC 76409 | || ||| ||||| ||||| || | ||| || || || | || |||| | | Sbjct 3537588 TAGCCCAAGAAAAAGGTCAATATGAAACTTATGAAGGATCACCAGTATCTAAAGGCATTC 3537647 Query 76410 TTCAGTTTGATATGTGGGAAGGTGAAACCA--AGCTCAACTACGACTGGGATGTTCTCAA 76467 | ||||||||||||| |||| |||||| || || | || ||| ||| | | || Sbjct 3537648 TACAGTTTGATATGT-GGAATCGAAAACCAACAGATC-TTTGGGATTGGAATGATTTGAA 3537705 Query 76468 GGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGC 76527 || ||| | | || | || || ||| | | |||| |||||||||||||| Sbjct 3537706 ATCTCGAATCGCTAAATATGGAATACGAAATAGTTTGCTTGTGGCTCCAATGCCAACAGC 3537765 Query 76528 CTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTA 76587 || || |||||||| | || || ||||| | | ||||| || ||||| || || || Sbjct 3537766 TTCGACTGCACAAATTCTTGGCAACAATGAGTCTATCGAACCTTATACAACTAATATATA 3537825 Query 76588 C 76588 | Sbjct 3537826 C 3537826 >seq1101 Length=1082900 Score = 89.7 bits (98), Expect = 6e-13 Identities = 298/452 (66%), Gaps = 14/452 (3%) Strand=Plus/Plus Query 75876 TTTGGAAGGCTATTCTCAAATCAC--AGACGGAGACTGGAACACCATATATGCTTTACAA 75933 |||||| ||| ||| | | |||| | | ||| ||||||| || |||||| ||| || Sbjct 175597 TTTGGATGGCAATTTT--AGTCACTCAAATGGAAACTGGAAACCCCTATATGGTTTTTAA 175654 Query 75934 GGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCT 75993 ||||| || ||| |||||| | || | ||||| ||| || ||| ||| | Sbjct 175655 AGATGCCGCAAATCGAAAGTCTAACCAGCAAAACCTCGGAACCATCCAGTCCTCCAATTT 175714 Query 75994 TTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATC 76053 || || ||| || | | ||||| | ||||| | ||| |||| ||| | || || Sbjct 175715 ATGTACTGAAGTTATTCAATACACTTCTCCTGATGAAATCGCTATTTGTAATCTTGCTTC 175774 Query 76054 AATCGCCCTTCCAAAGTATGTCAATGAAGA-GACTCGCACTTTTGATTATGAAAAACTTC 76112 ||| | |||||||| ||||| || || | || | || ||||| || ||| ||| Sbjct 175775 AATTTCACTTCCAAAATATGTAAACCAAAAAGAATTT-ACATTTGACTAC--AAATCTTT 175831 Query 76113 --ATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTA 76170 |||||||||| ||| ||| |||| ||||| ||| ||| | |||| ||| || || Sbjct 175832 GTATGAAATCACCAAGGTTGCTACCGTCAATCTGAACAAAGTGGTCGACACAAACTTCTA 175891 Query 76171 TCCCGTTGAGACTGCGCGAAAGTCT-AATATGCGACACAGACCTATTGGTTTGGGTGTTC 76229 | | | || | | |||| ||||||| ||||| || ||||| | ||||| | Sbjct 175892 CCACTTGGAAGAAG-GAAAAAGAAGCAATATGCTGCACAGGCCAATTGGAATCGGTGTGC 175950 Query 76230 AAGGTCTCGCGGATGTATTTATTTTGTGCCG-CTACGCATTTGATTCAGATGAAGCCAAG 76288 ||||| | |||||||| | | |||| |||| | ||||| | | || || | Sbjct 175951 AAGGTTTAGCGGATGTGTATCAATTGTTAGAACTAC-CTTTTGACACGAAGGATGCTGAC 176009 Query 76289 GAGATGAATGCTCGTATCTTTGAAACCATGTA 76320 || ||| || |||||||||||||| || Sbjct 176010 ATTATCAATCAACGAATCTTTGAAACCATTTA 176041 >seq768 Length=1243675 Score = 84.2 bits (92), Expect = 3e-11 Identities = 171/250 (68%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 14333 GACTTGAAGCGCTCTATTGCCCATATGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTG 14392 ||| || ||||||| ||| | | |||| ||| || || ||||| | ||| | |||||| Sbjct 749023 GACGTGCAGCGCTCGATTCCGAACATGGTGGACGGGCTGAAGCCGGCGCAGCGCAAAGTG 748964 Query 14393 ATGTATGCTTGCTTCCATAAGAATCTCAAG-GAT--GAAATGAAGGTGGCACAACTGGCG 14449 |||| | ||| | ||||| ||| | | | |||||||||||||| || | || Sbjct 748963 CTGTACGGCGCGTTCAAAAAGAACCTCGTGCGCTCGGAAATGAAGGTGGCGCAGTTCGCA 748904 Query 14450 GCATATGTCGCGGACAAGTCTGC--GTACCACCATGGTGAAGTATCCTTAGCGGACACGA 14507 || ||||| ||| ||| || |||||||| || |||| ||| | ||| | ||| Sbjct 748903 AGCTACGTCGCAGAC--GTCAGCAGCTACCACCACGGCGAAGAATCGATTGCGCAGACGG 748846 Query 14508 TTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATTAACCTTCTTGAACCGTGTG 14567 | || || |||| | | | | || | |||||| | ||||| ||||| ||||| | Sbjct 748845 TCGTGAACATGGCGCAGCAGTTCGTCGGAACGAACAACCTGAACCTGCTTGAGCCGTGCG 748786 Query 14568 GTCAATTTGG 14577 |||| ||||| Sbjct 748785 GTCAGTTTGG 748776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596559741687360